Package: RDRToolbox 1.63.0

Christoph Bartenhagen

RDRToolbox: A package for nonlinear dimension reduction with Isomap and LLE.

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Authors:Christoph Bartenhagen

RDRToolbox_1.63.0.tar.gz
RDRToolbox_1.63.0.zip(r-4.7)RDRToolbox_1.63.0.zip(r-4.6)RDRToolbox_1.63.0.zip(r-4.5)
RDRToolbox_1.63.0.tgz(r-4.6-any)RDRToolbox_1.63.0.tgz(r-4.5-any)
RDRToolbox_1.63.0.tar.gz(r-4.7-any)RDRToolbox_1.63.0.tar.gz(r-4.6-any)
RDRToolbox_1.63.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RDRToolbox/json (API)

# Install 'RDRToolbox' in R:

install.packages('RDRToolbox', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:RDRToolbox-1.63.0(bioc 3.24)RDRToolbox-1.62.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

dimensionreduction featureextraction visualization clustering microarray

5.04 score 78 scripts 7 mentions 6 exports 29 dependencies

Last updated from:14aadefbc2. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	158
linux-devel-x86_64	NOTE	224
source / vignettes	OK	216
linux-release-x86_64	NOTE	215
macos-release-arm64	NOTE	103
macos-oldrel-arm64	NOTE	114
windows-devel	NOTE	115
windows-release	NOTE	106
windows-oldrel	NOTE	107
wasm-release	OK	143

Exports:DBIndex generateData Isomap LLE plotDR SwissRoll

Dependencies:base64enc bslib cachem cli digest evaluate fastmap fontawesome fs highr htmltools htmlwidgets jquerylib jsonlite knitr lifecycle magrittr MASS memoise mime R6 rappdirs rgl rlang rmarkdown sass tinytex xfun yaml

A package for nonlinear dimension reduction with Isomap and LLE.

Rendered fromvignette.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Davis-Bouldin-Index	DBIndex
Simulator for gene expression data	generateData
Isomap	Isomap
Locally Linear Embedding	LLE
Plotting tool for two and three dimensional data	plotDR
The Swiss Roll dataset	SwissRoll