{ "_id": "6a117810acfb0bcc41cf9841", "Package": "RDRToolbox", "Type": "Package", "Title": "A package for nonlinear dimension reduction with Isomap and LLE.", "Version": "1.63.0", "Date": "2019-01-22", "Author": "Christoph Bartenhagen", "Maintainer": "Christoph Bartenhagen ", "Description": "A package for nonlinear dimension reduction using the\nIsomap and LLE algorithm. It also includes a routine for\ncomputing the Davis-Bouldin-Index for cluster validation, a\nplotting tool and a data generator for microarray gene\nexpression data and for the Swiss Roll dataset.", "License": "GPL (>= 2)", "LazyLoad": "yes", "biocViews": "DimensionReduction, FeatureExtraction, Visualization,\nClustering, Microarray", "Config/pak/sysreqs": "cmake libfreetype6-dev libglu1-mesa-dev make\ntexlive libpng-dev libuv1-dev libgl1-mesa-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:34:47 UTC", "RemoteUrl": "https://github.com/bioc/RDRToolbox", "RemoteRef": "HEAD", "RemoteSha": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-23 09:45:01 UTC", "User": "root" }, "MD5sum": "4de2fb187aa954979d85348cd620a831", "_user": "bioc", "_type": "src", "_file": "RDRToolbox_1.63.0.tar.gz", "_fileid": "b037066c45ac281af6e65a550eb839a50db7ad994b6197872994cbe608da2f23", "_filesize": 285361, "_sha256": "b037066c45ac281af6e65a550eb839a50db7ad994b6197872994cbe608da2f23", "_created": "2026-05-23T09:45:01.000Z", "_published": "2026-05-23T09:49:04.129Z", "_jobs": [ { "job": 77513208488, "time": 184, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7176058610" }, { "job": 77513208522, "time": 205, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7176060405" }, { "job": 77513208503, "time": 206, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7176060618" }, { "job": 77513208520, "time": 93, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7176050606" }, { "job": 77513208514, "time": 90, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7176050374" }, { "job": 77513012983, "time": 229, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7176041649" }, { "job": 77513208487, "time": 161, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7176057639" }, { "job": 77513208541, "time": 111, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7176052128" }, { "job": 77513208539, "time": 98, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7176051115" }, { "job": 77513208527, "time": 159, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7176056600" } ], "_bioccheck": { "error": 1, "warning": 4, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/RDRToolbox", "_commit": { "id": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379687 }, "_maintainer": { "name": "Christoph Bartenhagen", "email": "c.bartenhagen@uni-koeln.de", "login": "seismicon", "description": "", "uuid": 79155204 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.9.0", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "rgl", "role": "Imports" }, { "package": "golubEsets", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.63.0", "bioc": "3.24" }, { "branch": "release", "version": "1.62.0", "bioc": "3.23" } ], "_topics": [ "dimensionreduction", "featureextraction", "visualization", "clustering", "microarray" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 460, "source": "https://www.bioconductor.org/packages/stats/bioc/RDRToolbox" }, "_mentions": 7, "_searchresults": 65, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/RDRToolbox.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "DBIndex", "generateData", "Isomap", "LLE", "plotDR", "SwissRoll" ], "_help": [ { "page": "DBIndex", "title": "Davis-Bouldin-Index", "topics": [ "DBIndex" ] }, { "page": "generateData", "title": "Simulator for gene expression data", "topics": [ "generateData" ] }, { "page": "Isomap", "title": "Isomap", "topics": [ "Isomap" ] }, { "page": "LLE", "title": "Locally Linear Embedding", "topics": [ "LLE" ] }, { "page": "plotDR", "title": "Plotting tool for two and three dimensional data", "topics": [ "plotDR" ] }, { "page": "SwissRoll", "title": "The Swiss Roll dataset", "topics": [ "SwissRoll" ] } ], "_rundeps": [ "base64enc", "bslib", "cachem", "cli", "digest", "evaluate", "fastmap", "fontawesome", "fs", "highr", "htmltools", "htmlwidgets", "jquerylib", "jsonlite", "knitr", "lifecycle", "magrittr", "MASS", "memoise", "mime", "R6", "rappdirs", "rgl", "rlang", "rmarkdown", "sass", "tinytex", "xfun", "yaml" ], "_vignettes": [ { "source": "vignette.Rnw", "filename": "vignette.pdf", "title": "A package for nonlinear dimension reduction with Isomap and LLE.", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:14:22", "modified": "2013-11-01 20:14:22", "commits": 1 } ], "_score": 4.959041392321094, "_indexed": true, "_nocasepkg": "rdrtoolbox", "_universes": [ "bioc", "seismicon" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.63.0", "date": "2026-05-23T09:48:27.000Z", "distro": "noble", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "008c922833d52f066c09c107fef0d95208452731fec97263c0f0d54cb4ffad8a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.6.0", "os": "linux", "version": "1.63.0", "date": "2026-05-23T09:48:31.000Z", "distro": "noble", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "02bc66dc2d98c40f395b57dda5dbcbc7af272483276d812bede1ea26f41ae71c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.5.3", "os": "mac", "version": "1.63.0", "date": "2026-05-23T09:46:34.000Z", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "44f18808e2fbd40c55fba78ad9669d8ddb8311b19fce2f041ce8a3797930c31f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.6.0", "os": "mac", "version": "1.63.0", "date": "2026-05-23T09:46:32.000Z", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "d3ef0e07a0f54ccf342a15e366447d488556324f956d9b9a6722976d0c644e0a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.6.0", "os": "wasm", "version": "1.63.0", "date": "2026-05-23T09:48:09.000Z", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "3c2d25e7ffd9922abd30d04d2fe9f191622b6b218691572246de6461d14a6b0e", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.7.0", "os": "win", "version": "1.63.0", "date": "2026-05-23T09:46:41.000Z", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "f861440be2903882ddbbe93b6f34952e6563c6be8005c0e2c1cc16dc924988b9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.5.3", "os": "win", "version": "1.63.0", "date": "2026-05-23T09:46:32.000Z", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "5b7740280e6b6cf73d23eed5c4712de98d4879e1accb4bb798f1ddf9f15616f6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" }, { "r": "4.6.0", "os": "win", "version": "1.63.0", "date": "2026-05-23T09:47:31.000Z", "commit": "14aadefbc21ef14faa1ca4f9077426112fb1caaa", "fileid": "dc257ced60be84441e77965d3e9c55b70c1fe2e794f79e39ad39818fc6f97f3c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26329499219" } ] }