Package: RAREsim 1.11.0
Ryan Barnard
RAREsim: Simulation of Rare Variant Genetic Data
Haplotype simulations of rare variant genetic data that emulates real data can be performed with RAREsim. RAREsim uses the expected number of variants in MAC bins - either as provided by default parameters or estimated from target data - and an abundance of rare variants as simulated HAPGEN2 to probabilistically prune variants. RAREsim produces haplotypes that emulate real sequencing data with respect to the total number of variants, allele frequency spectrum, haplotype structure, and variant annotation.
Authors:
RAREsim_1.11.0.tar.gz
RAREsim_1.11.0.zip(r-4.5)RAREsim_1.11.0.zip(r-4.4)RAREsim_1.11.0.zip(r-4.3)
RAREsim_1.11.0.tgz(r-4.5-any)RAREsim_1.11.0.tgz(r-4.4-any)RAREsim_1.11.0.tgz(r-4.3-any)
RAREsim_1.11.0.tar.gz(r-4.5-noble)RAREsim_1.11.0.tar.gz(r-4.4-noble)
RAREsim_1.11.0.tgz(r-4.4-emscripten)RAREsim_1.11.0.tgz(r-4.3-emscripten)
RAREsim.pdf |RAREsim.html✨
RAREsim/json (API)
NEWS
| # Install 'RAREsim' in R: |
| install.packages('RAREsim', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/meganmichelle/raresim/issues
- afs_afr - African/African American target data from gnomAD v2.1
- nvariant_afr - African target data for the Number of Variants function from gnomADv2.1
On BioConductor:RAREsim-1.11.0(bioc 3.21)RAREsim-1.10.0(bioc 3.20)
geneticssoftwarevariantannotationsequencing
Last updated 4 months agofrom:a9cca8e2e2. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 25 2025 |
| R-4.5-win | OK | Feb 25 2025 |
| R-4.5-mac | OK | Feb 25 2025 |
| R-4.5-linux | OK | Feb 25 2025 |
| R-4.4-win | OK | Feb 25 2025 |
| R-4.4-mac | OK | Feb 25 2025 |
| R-4.3-win | OK | Feb 25 2025 |
| R-4.3-mac | OK | Feb 25 2025 |
Exports:afsexpected_variantsfit_afsfit_nvariantnvariant
Dependencies:nloptr
