Package: Pviz 1.47.0

Renan Sauteraud

Pviz: Peptide Annotation and Data Visualization using Gviz

Pviz adapts the Gviz package for protein sequences and data.

Authors:Renan Sauteraud, Mike Jiang, Raphael Gottardo

Pviz_1.47.0.tar.gz
Pviz_1.47.0.zip(r-4.7)Pviz_1.47.0.zip(r-4.6)Pviz_1.47.0.zip(r-4.5)
Pviz_1.47.0.tgz(r-4.6-any)Pviz_1.47.0.tgz(r-4.5-any)
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Pviz_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Pviz/json (API)

# Install 'Pviz' in R:

install.packages('Pviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:Pviz-1.47.0(bioc 3.24)Pviz-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualization proteomics microarray

4.48 score 8 scripts 3 mentions 8 exports 143 dependencies

Last updated from:915acdb34f. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
bioc-checks	ERROR	251
linux-devel-x86_64	WARNING	480
source / vignettes	OK	447
linux-release-x86_64	WARNING	476
macos-release-arm64	WARNING	254
macos-oldrel-arm64	WARNING	221
windows-devel	WARNING	368
windows-release	WARNING	437
windows-oldrel	WARNING	364
wasm-release	OK	215

Exports:ATrack CladeTrack DTrack plot_clade plot_inter ProbeTrack ProteinAxisTrack ProteinSequenceTrack

Dependencies:abind AnnotationDbi AnnotationFilter askpass backports base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocParallel biomaRt Biostrings biovizBase bit bit64 bitops blob BSgenome bslib cachem checkmate cigarillo cli cluster codetools colorspace cpp11 crayon curl data.table DBI dbplyr DelayedArray deldir dichromat digest dplyr ensembldb evaluate farver fastmap filelock fontawesome foreign formatR Formula fs futile.logger futile.options generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 glue gridExtra gtable Gviz highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 interp IRanges isoband jpeg jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice latticeExtra lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mime nnet openssl pillar pkgconfig png prettyunits progress ProtGenerics purrr R6 rappdirs RColorBrewer Rcpp RcppEigen RCurl restfulr Rhtslib rjson rlang rmarkdown rpart Rsamtools RSQLite rstudioapi rtracklayer S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex UCSC.utils utf8 VariantAnnotation vctrs viridisLite withr xfun XML xml2 XVector yaml

The Pviz users guide

Introduction | Gviz tracks | Pviz new track types | Example of plot | Summary plots | sessionInfo

Rendered fromPviz.Rnwusingknitr::knitr

Last update: 2014-07-01
Started: 2014-07-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
ATrack class	ATrack ATrack-class
CladeTrack	CladeTrack CladeTrack-class
DTrack class	DTrack DTrack-class
Plot frequency of response for a single clade.	plot_clade
Plot frequency of response for each group	plot_inter
ProbeTrack	ProbeTrack ProbeTrack-class
ProteinAxisTrack	ProteinAxisTrack ProteinAxisTrack-class
ProteinSequenceTrack	ProteinSequenceTrack ProteinSequenceTrack-class

Usage by other packages (reverse dependencies)