Package: Pviz 1.41.0

Renan Sauteraud

Pviz: Peptide Annotation and Data Visualization using Gviz

Pviz adapts the Gviz package for protein sequences and data.

Authors:Renan Sauteraud, Mike Jiang, Raphael Gottardo

Pviz_1.41.0.tar.gz
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Pviz.pdf |Pviz.html✨
Pviz/json (API)

# Install 'Pviz' in R:

install.packages('Pviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:Pviz-1.41.0(bioc 3.21)Pviz-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualization proteomics microarray

4.48 score 4 scripts 261 downloads 3 mentions 8 exports 146 dependencies

Last updated 4 months agofrom:048901b958. Checks:1 OK, 7 WARNING. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 29 2025
R-4.5-win	WARNING	Jan 29 2025
R-4.5-mac	WARNING	Jan 29 2025
R-4.5-linux	WARNING	Jan 29 2025
R-4.4-win	WARNING	Jan 29 2025
R-4.4-mac	WARNING	Jan 29 2025
R-4.3-win	WARNING	Jan 29 2025
R-4.3-mac	WARNING	Jan 29 2025

Exports:ATrack CladeTrack DTrack plot_clade plot_inter ProbeTrack ProteinAxisTrack ProteinSequenceTrack

Dependencies:abind AnnotationDbi AnnotationFilter askpass backports base64enc BH Biobase BiocFileCache BiocGenerics BiocIO BiocParallel biomaRt Biostrings biovizBase bit bit64 bitops blob BSgenome bslib cachem checkmate cli cluster codetools colorspace cpp11 crayon curl data.table DBI dbplyr DelayedArray deldir dichromat digest dplyr ensembldb evaluate fansi farver fastmap filelock fontawesome foreign formatR Formula fs futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 glue gridExtra gtable Gviz highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 interp IRanges isoband jpeg jquerylib jsonlite KEGGREST knitr labeling lambda.r lattice latticeExtra lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime munsell nlme nnet openssl pillar pkgconfig plogr png prettyunits progress ProtGenerics purrr R6 rappdirs RColorBrewer Rcpp RcppEigen RCurl restfulr Rhtslib rjson rlang rmarkdown rpart Rsamtools RSQLite rstudioapi rtracklayer S4Arrays S4Vectors sass scales snow SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex UCSC.utils utf8 VariantAnnotation vctrs viridis viridisLite withr xfun XML xml2 XVector yaml

The Pviz users guide

Rendered fromPviz.Rnwusingknitr::knitron Jan 29 2025.

Last update: 2014-07-01
Started: 2014-07-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
ATrack class	ATrack ATrack-class
CladeTrack	CladeTrack CladeTrack-class
DTrack class	DTrack DTrack-class
Plot frequency of response for a single clade.	plot_clade
Plot frequency of response for each group	plot_inter
ProbeTrack	ProbeTrack ProbeTrack-class
ProteinAxisTrack	ProteinAxisTrack ProteinAxisTrack-class
ProteinSequenceTrack	ProteinSequenceTrack ProteinSequenceTrack-class

Usage by other packages (reverse dependencies)