{
  "_id": "6a1ab0801d7bb097a09d5873",
  "Package": "Pviz",
  "Type": "Package",
  "Title": "Peptide Annotation and Data Visualization using Gviz",
  "Version": "1.47.0",
  "Author": "Renan Sauteraud, Mike Jiang, Raphael Gottardo",
  "Maintainer": "Renan Sauteraud <rsautera@fhcrc.org>",
  "Description": "Pviz adapts the Gviz package for protein sequences and\ndata.",
  "License": "Artistic-2.0",
  "biocViews": "Visualization, Proteomics, Microarray",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev libjpeg-dev\nliblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev\nxz-utils zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:39:23 UTC",
  "RemoteUrl": "https://github.com/bioc/Pviz",
  "RemoteRef": "HEAD",
  "RemoteSha": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 07:03:48 UTC",
    "User": "root"
  },
  "MD5sum": "021e8c678ac09d1af7e71c69740f7e75",
  "_user": "bioc",
  "_type": "src",
  "_file": "Pviz_1.47.0.tar.gz",
  "_fileid": "7cda66715be0c075282d3ccde2287dbc6fc2bb429798f3157ef612be6e0c123f",
  "_filesize": 296916,
  "_sha256": "7cda66715be0c075282d3ccde2287dbc6fc2bb429798f3157ef612be6e0c123f",
  "_created": "2026-05-30T07:03:48.000Z",
  "_published": "2026-05-30T09:40:16.840Z",
  "_jobs": [
    {
      "job": 78632256814,
      "time": 260,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7306338106"
    },
    {
      "job": 78632256819,
      "time": 531,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306369551"
    },
    {
      "job": 78632256825,
      "time": 511,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306366902"
    },
    {
      "job": 78632256807,
      "time": 322,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7307199216"
    },
    {
      "job": 78632256811,
      "time": 333,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307200819"
    },
    {
      "job": 78631890553,
      "time": 370,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306307283"
    },
    {
      "job": 78632256817,
      "time": 151,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306325323"
    },
    {
      "job": 78632256834,
      "time": 409,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7306355672"
    },
    {
      "job": 78632256835,
      "time": 401,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7306354658"
    },
    {
      "job": 78632256840,
      "time": 371,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7306351305"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 3,
    "note": 14
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/Pviz",
  "_commit": {
    "id": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379963
  },
  "_maintainer": {
    "name": "Renan Sauteraud",
    "email": "rsautera@fhcrc.org"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0.0",
      "role": "Depends"
    },
    {
      "package": "Gviz",
      "version": ">= 1.7.10",
      "role": "Depends"
    },
    {
      "package": "biovizBase",
      "role": "Imports"
    },
    {
      "package": "Biostrings",
      "role": "Imports"
    },
    {
      "package": "GenomicRanges",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pepDat",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "visualization",
    "proteomics",
    "microarray"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 374,
    "source": "https://www.bioconductor.org/packages/stats/bioc/Pviz"
  },
  "_mentions": 3,
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/Pviz.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "ATrack",
    "CladeTrack",
    "DTrack",
    "plot_clade",
    "plot_inter",
    "ProbeTrack",
    "ProteinAxisTrack",
    "ProteinSequenceTrack"
  ],
  "_help": [
    {
      "page": "ATrack",
      "title": "ATrack class",
      "topics": [
        "ATrack",
        "ATrack-class"
      ]
    },
    {
      "page": "CladeTrack",
      "title": "CladeTrack",
      "topics": [
        "CladeTrack",
        "CladeTrack-class"
      ]
    },
    {
      "page": "DTrack",
      "title": "DTrack class",
      "topics": [
        "DTrack",
        "DTrack-class"
      ]
    },
    {
      "page": "plot_clade",
      "title": "Plot frequency of response for a single clade.",
      "topics": [
        "plot_clade"
      ]
    },
    {
      "page": "plot_inter",
      "title": "Plot frequency of response for each group",
      "topics": [
        "plot_inter"
      ]
    },
    {
      "page": "ProbeTrack",
      "title": "ProbeTrack",
      "topics": [
        "ProbeTrack",
        "ProbeTrack-class"
      ]
    },
    {
      "page": "ProteinAxisTrack",
      "title": "ProteinAxisTrack",
      "topics": [
        "ProteinAxisTrack",
        "ProteinAxisTrack-class"
      ]
    },
    {
      "page": "ProteinSequenceTrack",
      "title": "ProteinSequenceTrack",
      "topics": [
        "ProteinSequenceTrack",
        "ProteinSequenceTrack-class"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/Pviz/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationFilter",
    "askpass",
    "backports",
    "base64enc",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocIO",
    "BiocParallel",
    "biomaRt",
    "Biostrings",
    "biovizBase",
    "bit",
    "bit64",
    "bitops",
    "blob",
    "BSgenome",
    "bslib",
    "cachem",
    "checkmate",
    "cigarillo",
    "cli",
    "cluster",
    "codetools",
    "colorspace",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "deldir",
    "dichromat",
    "digest",
    "dplyr",
    "ensembldb",
    "evaluate",
    "farver",
    "fastmap",
    "filelock",
    "fontawesome",
    "foreign",
    "formatR",
    "Formula",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomeInfoDb",
    "GenomicAlignments",
    "GenomicFeatures",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "gridExtra",
    "gtable",
    "Gviz",
    "highr",
    "Hmisc",
    "hms",
    "htmlTable",
    "htmltools",
    "htmlwidgets",
    "httr",
    "httr2",
    "interp",
    "IRanges",
    "isoband",
    "jpeg",
    "jquerylib",
    "jsonlite",
    "KEGGREST",
    "knitr",
    "labeling",
    "lambda.r",
    "lattice",
    "latticeExtra",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "nnet",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "progress",
    "ProtGenerics",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RCurl",
    "restfulr",
    "Rhtslib",
    "rjson",
    "rlang",
    "rmarkdown",
    "rpart",
    "Rsamtools",
    "RSQLite",
    "rstudioapi",
    "rtracklayer",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "snow",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "UCSC.utils",
    "utf8",
    "VariantAnnotation",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XML",
    "xml2",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Pviz.Rnw",
      "filename": "Pviz.pdf",
      "title": "The Pviz users guide",
      "engine": "knitr::knitr",
      "headings": [],
      "created": "2014-07-01 20:38:11",
      "modified": "2014-07-01 20:38:11",
      "commits": 1
    }
  ],
  "_score": 4.477121254719663,
  "_indexed": true,
  "_nocasepkg": "pviz",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-05-30T07:08:39.000Z",
      "distro": "noble",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "71d1121b414f281f4a845cf055c847d8ea5b1ea0fdbef1317c039ecf3e1363fd",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.47.0",
      "date": "2026-05-30T07:08:17.000Z",
      "distro": "noble",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "e31e5433151e8fe443e2c3538a745ade25af49ae59d3c0ab76643d1c1237c8da",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-05-30T09:28:41.000Z",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "d89cf7898ac6c85db43befb7a33d10f5a340273ca143f7ccc64a4e8e1e1fb8df",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.47.0",
      "date": "2026-05-30T09:28:43.000Z",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "5a643a10ccc4c3475dfe0f7a6377316a3c2a576bbc0ccbd55e38e91e3235bd83",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.47.0",
      "date": "2026-05-30T07:07:28.000Z",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "375fecaab35c48b2234d9e783eaf4415b8c79dc3629b85ed62ad42555b92f298",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-05-30T07:07:01.000Z",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "61ef7614058b79a21001b048104fee3f0c59fba0114cb5b6f57aa6e600a48271",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-05-30T07:06:46.000Z",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "c9ef76bcd206b72ea766e70a5049361ead6f6e6196f5bfe2b60e542cc7d8fd99",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.47.0",
      "date": "2026-05-30T07:06:25.000Z",
      "commit": "915acdb34ff2f5817beb037120a43fef0fa80ea9",
      "fileid": "fdfc35c0a890f183a70c944f62207dcc965b1eac6da291cc54610fc05ad2891e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677477123"
    }
  ]
}