Package: PinPath 0.99.3

Jarno Koetsier

PinPath: Visualization of Omics Data on Pathway Diagrams

With PinPath, you can visualize omics data onto pathways diagrams from WikiPathways and KEGG.

Authors:Jarno Koetsier [aut, cre], Lars Eijssen [aut], Egon Willighagen [aut], Stichting Terre - The Dutch Rett Syndrome Foundation [fnd]

PinPath_0.99.3.tar.gz
PinPath_0.99.3.zip(r-4.7)PinPath_0.99.3.zip(r-4.6)PinPath_0.99.3.zip(r-4.5)
PinPath_0.99.3.tgz(r-4.6-any)PinPath_0.99.3.tgz(r-4.5-any)
PinPath_0.99.3.tar.gz(r-4.7-any)PinPath_0.99.3.tar.gz(r-4.6-any)
PinPath_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PinPath/json (API)

# Install 'PinPath' in R:
install.packages('PinPath', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/synum-lab/pinpath/issues

On CRAN:

Conda:

pathwaysvisualizationgraphandnetworkkeggomicspathwaywikipathways

4.65 score 5 stars 5 exports 84 dependencies

Last updated from:718d7b8a24. Checks:10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksOK235
linux-devel-x86_64OK341
source / vignettesOK283
linux-release-x86_64OK317
macos-release-arm64OK127
macos-oldrel-arm64OK123
windows-develOK179
windows-releaseOK183
windows-oldrelOK241
wasm-releaseOK209

Exports:defaultColorListdrawGPMLdrawKGMLGPML2NetworkKGML2Network

Dependencies:AnnotationDbiaskpassbase64encBiobaseBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfarverfastmapfilelockgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridBasegridExtragtablehttrhttr2igraphIRangesisobandjsonliteKEGGRESTlabelinglatticelifecyclemagickmagrittrMASSMatrixmemoisemimeopensslpillarpkgconfigpngpolyclippurrrR6rappdirsRColorBrewerRcppRcppArmadillorlangRSQLiteS4VectorsS7scalesSeqinfoshapestringistringrsvglitesyssystemfontstextshapingtibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrXMLxml2XVector

WikiPathways visualization
Introduction | Installation | Dataset | Set colors | Plot pathway | Plot network | Session info
Rendered fromWikiPathways-visualization.Rmdusingknitr::rmarkdown

Last update: 2026-04-23
Started: 2026-03-10

KEGG visualization
Introduction | Installation | Dataset | Set colors | Plot pathway | Plot network | Session info
Rendered fromKEGG-visualization.Rmdusingknitr::rmarkdown

Last update: 2026-04-23
Started: 2026-03-10