Package: PinPath 0.99.7

Jarno Koetsier

PinPath: Visualization of Omics Data onto Pathway Diagrams

PinPath enables flexible visualization of (omics) data onto pathways diagrams, allowing users to pinpoint where the relevant changes occur. It supports pathway diagrams from WikiPathways and KEGG, as well as custom GPML and KGML files. Data can be displayed on both native pathway layouts and network representations.

Authors:Jarno Koetsier [aut, cre], Lars Eijssen [aut], Egon Willighagen [aut], Stichting Terre - The Dutch Rett Syndrome Foundation [fnd]

PinPath_0.99.7.tar.gz
PinPath_0.99.7.zip(r-4.7-any)PinPath_0.99.7.zip(r-4.6-any)PinPath_0.99.7.zip(r-4.5-any)
PinPath_0.99.7.tgz(r-4.6-any)PinPath_0.99.7.tgz(r-4.5-any)
PinPath_0.99.7.tar.gz(r-4.7-any)PinPath_0.99.7.tar.gz(r-4.6-any)
PinPath_0.99.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PinPath/json (API)

# Install 'PinPath' in R:
install.packages('PinPath', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/synum-lab/pinpath/issues

On BioConductor:PinPath-0.99.7(bioc 3.24)

pathwaysvisualizationgraphandnetworkkeggmetabolomicsproteomicstranscriptomicsnetworkomicspathwaywikipathways

6.07 score 9 stars 9 scripts 174 downloads 5 exports 84 dependencies

Last updated from:e9e9e443a1. Checks:10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksOK210
linux-develOK322
source / vignettesOK291
linux-releaseOK319
macos-releaseOK232
macos-oldrelOK230
windows-develOK262
windows-releaseOK283
windows-oldrelOK294
wasm-releaseOK220

Exports:defaultColorListdrawGPMLdrawKGMLGPML2NetworkKGML2Network

Dependencies:AnnotationDbiaskpassbase64encBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfarverfastmapfilelockgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridBasegridExtragtablehttrhttr2igraphIRangesisobandjsonliteKEGGRESTlabelinglatticelifecyclemagickmagrittrMASSMatrixmemoisemimeopensslpillarpkgconfigpngpolyclippurrrR6RColorBrewerRcppRcppArmadillorlangRSQLiteS4VectorsS7scalesSeqinfoshapestringistringrsvglitesyssystemfontstextshapingtibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithrXMLxml2XVector

WikiPathways visualization
Introduction | Installation | Dataset | Set colors | Plot pathway | Plot network | Session info
Rendered fromWikiPathways-visualization.Rmdusingknitr::rmarkdown

Last update: 2026-10-18
Started: 2026-03-10

KEGG visualization
Introduction | Installation | Dataset | Set colors | Plot pathway | Plot network | Session info
Rendered fromKEGG-visualization.Rmdusingknitr::rmarkdown

Last update: 2026-10-18
Started: 2026-03-10