Package: PinPath
Type: Package
Title: Visualization of Omics Data onto Pathway Diagrams
Version: 0.99.6
Date: 2026-10-15
Authors@R: c(
    person("Jarno", "Koetsier", role = c("aut","cre"), email = "jarno.koetsier@gmail.com", comment = c(ORCID = "0000-0002-7981-1345")),
    person("Lars", "Eijssen", role = "aut", comment = c(ORCID = "0000-0002-6473-2839")),
    person("Egon", "Willighagen", role = "aut", comment = c(ORCID = "0000-0001-7542-0286")),
    person("Stichting Terre - The Dutch Rett Syndrome Foundation", role="fnd"))
Imports: grDevices, graphics, stats, XML, xml2, magrittr, dplyr, tidyr,
        stringr, magick, shape, grid, gridBase, svglite, AnnotationDbi,
        igraph, ggraph, ggplot2, BiocFileCache, BiocGenerics, rlang,
        KEGGREST, Biobase
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown,
        rWikiPathways, org.Hs.eg.db, metaboliteIDmapping
Depends: R (>= 4.5.0)
Encoding: UTF-8
Description: PinPath enables flexible visualization of (omics) data
        onto pathways diagrams, allowing users to pinpoint where the
        relevant changes occur. It supports pathway diagrams from
        WikiPathways and KEGG, as well as custom GPML and KGML files.
        Data can be displayed on both native pathway layouts and
        network representations.
License: MIT + file LICENSE
URL: https://github.com/SyNUM-lab/PinPath
BugReports: https://github.com/SyNUM-lab/PinPath/issues
biocViews: Pathways, Visualization, GraphAndNetwork, KEGG,
        Metabolomics, Proteomics, Transcriptomics, Network
NeedsCompilation: no
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        libglpk-dev libharfbuzz-dev libmagick++-dev gsfonts libicu-dev
        libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-18 10:01:52 UTC
RemoteUrl: https://github.com/bioc/PinPath
RemoteRef: HEAD
RemoteSha: a3bac715cc43639efc8329f93c86cc9129204949
Packaged: 2026-10-18 14:50:53 UTC; root
Author: Jarno Koetsier [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7981-1345>),
  Lars Eijssen [aut] (ORCID: <https://orcid.org/0000-0002-6473-2839>),
  Egon Willighagen [aut] (ORCID: <https://orcid.org/0000-0001-7542-0286>),
  Stichting Terre - The Dutch Rett Syndrome Foundation [fnd]
Maintainer: Jarno Koetsier <jarno.koetsier@gmail.com>