Package: PhenoGeneRanker 1.13.0

Cagatay Dursun

PhenoGeneRanker: PhenoGeneRanker: A gene and phenotype prioritization tool

This package is a gene/phenotype prioritization tool that utilizes multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking using random stratified sampling of genes/phenotypes based on their connectivity degree in the network. https://dl.acm.org/doi/10.1145/3307339.3342155.

Authors:Cagatay Dursun [aut, cre]

PhenoGeneRanker_1.13.0.tar.gz
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PhenoGeneRanker.pdf |PhenoGeneRanker.html✨
PhenoGeneRanker/json (API)
NEWS

# Install 'PhenoGeneRanker' in R:

install.packages('PhenoGeneRanker', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:PhenoGeneRanker-1.13.0(bioc 3.20)PhenoGeneRanker-1.12.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

biomedicalinformatics geneprediction graphandnetwork network networkinference pathways software systemsbiology

2 exports 4.00 score 24 dependencies 1 scripts 104 downloads

Last updated 5 months agofrom:091ee2decd. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 20 2024
R-4.5-win	OK	Sep 20 2024
R-4.5-linux	OK	Sep 20 2024
R-4.4-win	OK	Sep 20 2024
R-4.4-mac	OK	Sep 20 2024
R-4.3-win	OK	Sep 20 2024
R-4.3-mac	OK	Sep 20 2024