Package: PhenoGeneRanker 1.21.0

Cagatay Dursun

PhenoGeneRanker: PhenoGeneRanker: A gene and phenotype prioritization tool

This package is a gene/phenotype prioritization tool that utilizes multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking using random stratified sampling of genes/phenotypes based on their connectivity degree in the network. https://dl.acm.org/doi/10.1145/3307339.3342155.

Authors:Cagatay Dursun [aut, cre]

PhenoGeneRanker_1.21.0.tar.gz
PhenoGeneRanker_1.21.0.zip(r-4.7)PhenoGeneRanker_1.21.0.zip(r-4.6)PhenoGeneRanker_1.21.0.zip(r-4.5)
PhenoGeneRanker_1.21.0.tgz(r-4.6-any)PhenoGeneRanker_1.21.0.tgz(r-4.5-any)
PhenoGeneRanker_1.21.0.tar.gz(r-4.7-any)PhenoGeneRanker_1.21.0.tar.gz(r-4.6-any)
PhenoGeneRanker_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhenoGeneRanker/json (API)

# Install 'PhenoGeneRanker' in R:

install.packages('PhenoGeneRanker', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:PhenoGeneRanker-1.21.0(bioc 3.24)PhenoGeneRanker-1.20.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

biomedicalinformatics geneprediction graphandnetwork network networkinference pathways software systemsbiology

4.00 score 1 scripts 2 exports 23 dependencies

Last updated from:58c8c2c132. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	153
linux-devel-x86_64	OK	205
source / vignettes	OK	454
linux-release-x86_64	OK	251
macos-release-arm64	OK	113
macos-oldrel-arm64	OK	121
windows-devel	OK	124
windows-release	OK	129
windows-oldrel	OK	124
wasm-release	OK	105