Package: PhenoGeneRanker
Type: Package
Title: PhenoGeneRanker: A gene and phenotype prioritization tool
Version: 1.21.0
Authors@R: c(person(given="Cagatay", family="Dursun", email="cagataydursun@gmail.com", role=c("aut", "cre")))
Description: This package is a gene/phenotype prioritization tool that
        utilizes multiplex heterogeneous gene phenotype network.
        PhenoGeneRanker allows multi-layer gene and phenotype networks.
        It also calculates empirical p-values of gene/phenotype ranking
        using random stratified sampling of genes/phenotypes based on
        their connectivity degree in the network.
        https://dl.acm.org/doi/10.1145/3307339.3342155.
License: Creative Commons Attribution 4.0 International License
Imports: igraph, Matrix, foreach, doParallel, dplyr, stats, utils,
        parallel
Suggests: knitr, rmarkdown
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.1.1
biocViews: BiomedicalInformatics, GenePrediction, GraphAndNetwork,
        Network, NetworkInference, Pathways, Software, SystemsBiology
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:55:03 UTC
RemoteUrl: https://github.com/bioc/PhenoGeneRanker
RemoteRef: HEAD
RemoteSha: 58c8c2c132c916f2a3c110fd619e01be55647125
NeedsCompilation: no
Packaged: 2026-06-23 06:40:42 UTC; root
Author: Cagatay Dursun [aut, cre]
Maintainer: Cagatay Dursun <cagataydursun@gmail.com>