Introduction | Installation | The Unimod database | Different types of PTM annotations | Add modifications to a sequence | Session information
Package: PTMods 1.1.0
Guillaume Deflandre
PTMods: Managing Post-Translational Modifications in R
An interface to the community supported database for amino acid/protein modifications using mass spectrometry.
Authors:
PTMods_1.1.0.tar.gz
PTMods_1.1.0.zip(r-4.7)PTMods_1.1.0.zip(r-4.6)PTMods_1.1.0.zip(r-4.5)
PTMods_1.1.0.tgz(r-4.6-any)PTMods_1.1.0.tgz(r-4.5-any)
PTMods_1.1.0.tar.gz(r-4.7-any)PTMods_1.1.0.tar.gz(r-4.6-any)
PTMods_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PTMods/json (API)
| # Install 'PTMods' in R: |
| install.packages('PTMods', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rformassspectrometry/ptmods/issues
Datasets:
- aminoacids - Amminoacids data set.
- elements - Elements data set.
- modifications - Modifications data set.
On BioConductor:PTMods-1.1.0(bioc 3.24)PTMods-1.0.0(bioc 3.23)
proteomicsmassspectrometryamino-acid-modificationsmass-spectrometryprotein
Last updated from:08ea1e1bf0. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 167 | ||
| linux-devel-x86_64 | OK | 185 | ||
| source / vignettes | OK | 163 | ||
| linux-release-x86_64 | OK | 223 | ||
| macos-release-arm64 | OK | 125 | ||
| macos-oldrel-arm64 | OK | 97 | ||
| windows-devel | OK | 110 | ||
| windows-release | OK | 92 | ||
| windows-oldrel | OK | 89 | ||
| wasm-release | OK | 167 |
Exports:addFixedModificationsaddModificationsaddVariableModificationscombineModificationsconvertAnnotationgetCanonicalSequencegetModificationsCounts
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Managing amino acid modifications for mass spectrometry in R. | PTMods-package PTMods |
| Add fixed modifications | addFixedModifications |
| Add fixed and variable modifications to peptide sequences | addModifications |
| Add variable modifications | addVariableModifications |
| Amminoacids data set. | aminoacids |
| Combines consecutive modifications on amino acids in peptide sequences. | combineModifications |
| Convert sequences from one annotation style to another | .convertAnnotation convertAnnotation |
| Elements data set. | elements |
| Get canonical sequence from any peptidoform | getCanonicalSequence |
| Extract modification counts from one or more peptide sequences | getModificationsCounts |
| Modifications data set. | modifications |
