NEWS
PTMods 0.99
PTMods 0.99.6
- Adjusted documentation in
convertAnnotation().
PTMods 0.99.5
- Import
stats::setNames.
- Specify package name when loading data (fixes an
[https://github.com/lgatto/MSnbase/issues/613](issue in MSnbase)).
PTMods 0.99.4
- Added
getModificationsCounts()
convertAnnotation() now also has a verbose parameter to suppress warnings
if need be.
PTMods 0.99.3
- Added
addModifications(), addFixedModifications(),
addVariableModifications(), getCanonicalSequence() and useful PTM utils.
PTMods 0.99.2
- Update PTMods datasets [2026-02-18].
- Improved performance of
convertAnnotation() by calling the modifications
dataset before .convertAnnotation().
PTMods 0.99.1
- Bump for re-build in Bioconductor submission (due to missing
maintainer e-mail address)
PTMods 0.99.0
- Bump version for Bioconductor submission
PTMods 0.3
- Update PTMods datasets [2026-01-02 Fri].
- Rename the package to
PTMods and add vignette.
- Add
convertAnnotation() to parse and convert between 3 PTM annotation
styles. Currently supports unimodId, unimod name and deltaMass.
PTMods 0.2
- Update datasets to latest unimod version.
- In the new unimod version some IDs are duplicated using the current
"Name:Site:Position:NeutralLoss" ID scheme. For these we add increasing
numbers to the end ("Name:Site:Position:NeutralLoss:DuplicateNumber").
- Now depends on R 3.5 (serialisation of RData files changed).
PTMods 0.1