Package: OSCA.multisample 1.21.1
Alan OCallaghan
OSCA.multisample: OSCA for Multiple Samples
Deploys the multi-sample analysis chapters for the "Orchestrating Single Cell Analysis with Bioconductor" book. This describes the handling of multiple samples in a single-cell RNA-seq analysis, starting with integration of multiple datasets into a common space for consistent analyses, differential expression comparisons between conditions based on pseudo-bulk samples, and differential abundance analyses for cell subpopulations. It is intended for readers who are already familiar with basic single-cell analyses, possibly after reading some of the prior books in this collection.
Authors:
OSCA.multisample_1.21.1.tar.gz
OSCA.multisample_1.21.1.tar.gz(r-4.7-any)OSCA.multisample_1.21.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OSCA.multisample/json (API)
| # Install 'OSCA.multisample' in R: |
| install.packages('OSCA.multisample', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/osca-source/osca.multisample/issues
On BioConductor:OSCA.multisample-1.21.1(books 3.24)OSCA.multisample-1.20.0(books 3.23)
immunooncologyworkflowworkflowsinglecellworkflowdatapkg
Last updated from:6984d54a21. Checks:1 NOTE, 2 WARNING, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 143 | ||
| linux-devel | WARNING | 234 | ||
| source / vignettes | OK | 178 | ||
| linux-release | WARNING | 199 |
Exports:
Dependencies:abindassortheadbeachmatBiocGenericsbiocmakeBiocNeighborsDelayedArraydir.expiryfilelockgenericsIRangeslatticeMatrixMatrixGenericsmatrixStatsRcppRigraphlibS4ArraysS4VectorsscrapperSparseArrayXVector
Readme and manuals
Help Manual
| Help page | Topics |
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