Package: OSCA.multisample
Title: OSCA for Multiple Samples
Version: 1.21.1
Date: 2026-08-28
Authors@R: c( 
        person('Robert', 'Amezquita', role = c('aut')), 
        person('Aaron', 'Lun', role = c('aut')),
        person('Stephanie', 'Hicks', role = 'aut'), 
        person('Raphael', 'Gottardo', role = 'aut'),
        person("Alan", "O'Callaghan", role = 'cre', email = "alan.ocallaghan@outlook.com")
    )
Description: Deploys the multi-sample analysis chapters for the
        "Orchestrating Single Cell Analysis with Bioconductor" book.
        This describes the handling of multiple samples in a
        single-cell RNA-seq analysis, starting with integration of
        multiple datasets into a common space for consistent analyses,
        differential expression comparisons between conditions based on
        pseudo-bulk samples, and differential abundance analyses for
        cell subpopulations. It is intended for readers who are already
        familiar with basic single-cell analyses, possibly after
        reading some of the prior books in this collection.
Depends: scrapper
Suggests: rmarkdown, BiocStyle, knitr
VignetteBuilder: knitr
License: CC BY
URL: https://github.com/OSCA-source/OSCA.multisample
biocViews: ImmunoOncologyWorkflow, Workflow, SingleCellWorkflow
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-28 07:58:34 UTC
RemoteUrl: https://github.com/bioc/OSCA.multisample
RemoteRef: HEAD
RemoteSha: 6984d54a2143230e7d2bfe835d1e1379f3632754
NeedsCompilation: no
Packaged: 2026-10-10 10:52:41 UTC; root
Author: Robert Amezquita [aut],
  Aaron Lun [aut],
  Stephanie Hicks [aut],
  Raphael Gottardo [aut],
  Alan O'Callaghan [cre]
Maintainer: Alan O'Callaghan <alan.ocallaghan@outlook.com>