Package: OSCA.intro 1.21.0
OSCA.intro: Introduction to OSCA
Deploys the introduction to the "Orchestrating Single Cell Analysis with Bioconductor" book. This describes how to install R and Bioconductor packages, links out to some resources to learn R, describes how to load datasets into an R session, provides an overview of the SingleCellExperiment class, and performs a "quick start" demonstration for basic single-cell RNA-seq analyses. It is intended for readers with little-to-no computational background who are just getting started with analyses in R.
Authors:
OSCA.intro_1.21.0.tar.gz
OSCA.intro_1.21.0.tar.gz(r-4.7-any)OSCA.intro_1.21.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OSCA.intro/json (API)
| # Install 'OSCA.intro' in R: |
| install.packages('OSCA.intro', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/osca-source/osca.intro/issues
On BioConductor:OSCA.intro-1.21.0(books 3.24)OSCA.intro-1.20.0(books 3.23)
immunooncologyworkflowworkflowsinglecellworkflowdatapkg
Last updated from:2a2b6c57f4. Checks:1 NOTE, 2 WARNING, 1 ERROR. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 172 | ||
| linux-devel | WARNING | 267 | ||
| source / vignettes | ERROR | 1079 | ||
| linux-release | WARNING | 290 |
Exports:
Dependencies:abindalabaster.basealabaster.matrixalabaster.rangesalabaster.scealabaster.schemasalabaster.seAnnotationDbiAnnotationFilterAnnotationHubaskpassassortheadbase64encbasiliskbatchelorbeachmatbeeswarmBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocNeighborsBiocParallelBiocSingularBiocStyleBiocVersionBiostringsbitbit64bitopsblobblusterbookdownbslibcachemcellrangercigarillocliclusterCodeDependscodetoolscpp11crayoncurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdir.expirydplyrdqrngDropletTestFilesDropletUtilsedgeRensembldbevaluateExperimentHubfarverfastmapfilelockFNNfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggbeeswarmggplot2ggrepelgluegraphgridExtragtablegypsumh5mreadHDF5Arrayherehighrhmshtmltoolshttrhttr2igraphIRangesirlbaisobandjquerylibjsonlitejsonvalidateKEGGRESTknitrlabelinglambda.rlatticelazyevallifecyclelimmalocfitLoomExperimentmagrittrMatrixMatrixGenericsmatrixStatsmemoisemetapodmimeopensslpheatmappillarpkgconfigpngprettyunitsprogressProtGenericspurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppAnnoyRcppEigenRcppMLRcppProgressRcppTOMLRCurlreadxlrebookrematchResidualMatrixrestfulrreticulaterhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrprojrootRsamtoolsRSpectraRSQLitersvdrtracklayerRtsneS4ArraysS4VectorsS7sassScaledMatrixscalesscaterscranscRNAseqscuttleSeqinfoSingleCellExperimentsitmosnowSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8uwotV8vctrsviporviridisviridisLitewithrxfunXMLXVectoryamlzellkonverter
Readme and manuals
Help Manual
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