Package: OSCA.intro
Title: Introduction to OSCA
Version: 1.21.0
Date: 2025-06-26
Authors@R: c( 
        person('Robert', 'Amezquita', role = 'aut'), 
        person('Aaron', 'Lun', role = 'aut'), 
        person('Stephanie', 'Hicks', role = 'aut'), 
        person('Raphael', 'Gottardo', role = 'aut'),
        person('Ludwig', 'Geistlinger', role = 'cre', email = "ludwig_geistlinger@hms.harvard.edu") 
    )
Description: Deploys the introduction to the "Orchestrating Single Cell
        Analysis with Bioconductor" book. This describes how to install
        R and Bioconductor packages, links out to some resources to
        learn R, describes how to load datasets into an R session,
        provides an overview of the SingleCellExperiment class, and
        performs a "quick start" demonstration for basic single-cell
        RNA-seq analyses. It is intended for readers with little-to-no
        computational background who are just getting started with
        analyses in R.
Depends: batchelor, BiocFileCache, BiocManager, bluster,
        DropletTestFiles, DropletUtils, gridExtra, knitr,
        LoomExperiment, R.utils, readxl, rebook, rmarkdown,
        rtracklayer, scater, scran, scRNAseq, scuttle,
        SingleCellExperiment, uwot, zellkonverter
Suggests: BiocManager, rmarkdown, knitr
VignetteBuilder: knitr
License: CC BY 4.0
URL: https://github.com/OSCA-source/OSCA.intro
biocViews: ImmunoOncologyWorkflow, Workflow, SingleCellWorkflow
RoxygenNote: 7.1.1
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        python3 libnode-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:53:40 UTC
RemoteUrl: https://github.com/bioc/OSCA.intro
RemoteRef: HEAD
RemoteSha: 2a2b6c57f4cec61d5ca751c2db83f812320e3eba
NeedsCompilation: no
Packaged: 2026-10-10 11:07:13 UTC; root
Author: Robert Amezquita [aut],
  Aaron Lun [aut],
  Stephanie Hicks [aut],
  Raphael Gottardo [aut],
  Ludwig Geistlinger [cre]
Maintainer: Ludwig Geistlinger <ludwig_geistlinger@hms.harvard.edu>