Package: MsBackendRawFileReader 1.19.0

Christian Panse

MsBackendRawFileReader: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Authors:Christian Panse [aut, cre], Tobias Kockmann [aut], Roger Gine Bertomeu [ctb]

MsBackendRawFileReader_1.19.0.tar.gz
MsBackendRawFileReader_1.19.0.zip(r-4.7-any)MsBackendRawFileReader_1.19.0.zip(r-4.6-any)MsBackendRawFileReader_1.19.0.zip(r-4.5-any)
MsBackendRawFileReader_1.19.0.tgz(r-4.6-any)MsBackendRawFileReader_1.19.0.tgz(r-4.5-any)
MsBackendRawFileReader_1.19.0.tar.gz(r-4.7-any)MsBackendRawFileReader_1.19.0.tar.gz(r-4.6-any)
MsBackendRawFileReader_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendRawFileReader/json (API)

# Install 'MsBackendRawFileReader' in R:
install.packages('MsBackendRawFileReader', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fgcz/msbackendrawfilereader/issues

On BioConductor:MsBackendRawFileReader-1.19.0(bioc 3.24)MsBackendRawFileReader-1.18.0(bioc 3.23)

massspectrometryproteomicsmetabolomics

4.73 score 6 stars 18 scripts 458 downloads 8 exports 24 dependencies

Last updated from:f225e34594. Checks:1 WARNING, 8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING141
linux-devel-x86_64ERROR260
source / vignettesERROR260
linux-release-x86_64ERROR242
macos-release-arm64ERROR135
macos-oldrel-arm64ERROR161
windows-devel-x86_64ERROR151
windows-release-x86_64ERROR118
windows-oldrel-x86_64ERROR136
wasm-releaseOK126

Exports:extractByIndexfilterScanintensityioBenchmarkMsBackendRawFileReadermzscanIndexscanType

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11data.tableformatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsrawrrRcppS4VectorssnowSpectra

Readme and manuals

Help Manual

Help pageTopics
RawFileReader_read_peaks benchmarkioBenchmark
MsBackendRawFileReaderfilterScan,MsBackendRawFileReader-method MsBackendRawFileReader scanIndex,MsBackendRawFileReader-method scanType,MsBackendRawFileReader-method
RawFileReader-based backendMsBackendRawFileReader-class