Package: MsBackendRawFileReader 1.19.0

Christian Panse

MsBackendRawFileReader: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Authors:Christian Panse [aut, cre], Tobias Kockmann [aut], Roger Gine Bertomeu [ctb]

MsBackendRawFileReader_1.19.0.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendRawFileReader/json (API)

# Install 'MsBackendRawFileReader' in R:

install.packages('MsBackendRawFileReader', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fgcz/msbackendrawfilereader/issues

On BioConductor:MsBackendRawFileReader-1.19.0(bioc 3.24)MsBackendRawFileReader-1.18.0(bioc 3.23)

massspectrometry proteomics metabolomics

5.48 score 6 stars 7 scripts 8 exports 24 dependencies

Last updated from:f225e34594. Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	160
linux-devel-x86_64	ERROR	236
source / vignettes	OK	309
linux-release-x86_64	ERROR	285
macos-release-arm64	ERROR	123
macos-oldrel-arm64	ERROR	115
windows-devel	ERROR	148
windows-release	ERROR	155
windows-oldrel	ERROR	141
wasm-release	OK	193

Exports:extractByIndex filterScan intensity ioBenchmark MsBackendRawFileReader mz scanIndex scanType

Dependencies:BH BiocGenerics BiocParallel clue cluster codetools cpp11 data.table formatR fs futile.logger futile.options generics IRanges lambda.r MASS MetaboCoreUtils MsCoreUtils ProtGenerics rawrr Rcpp S4Vectors snow Spectra

On Using and Extending the MsBackendRawFileReader Backend

Rendered fromMsBackendRawFileReader.Rmdusingknitr::rmarkdown

Last update: 2024-11-07
Started: 2019-06-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
RawFileReader_read_peaks benchmark	ioBenchmark
MsBackendRawFileReader	filterScan,MsBackendRawFileReader-method MsBackendRawFileReader scanIndex,MsBackendRawFileReader-method scanType,MsBackendRawFileReader-method
RawFileReader-based backend	MsBackendRawFileReader-class