Package: MsBackendRawFileReader 1.13.1

Christian Panse

MsBackendRawFileReader: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Authors:Christian Panse [aut, cre], Tobias Kockmann [aut], Roger Gine Bertomeu [ctb]

MsBackendRawFileReader_1.13.1.tar.gz
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MsBackendRawFileReader.pdf |MsBackendRawFileReader.html✨
MsBackendRawFileReader/json (API)
NEWS

# Install 'MsBackendRawFileReader' in R:
install.packages('MsBackendRawFileReader', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fgcz/msbackendrawfilereader/issues

On BioConductor:MsBackendRawFileReader-1.13.1(bioc 3.21)MsBackendRawFileReader-1.12.0(bioc 3.20)

massspectrometryproteomicsmetabolomics

5.94 score 5 stars 5 scripts 232 downloads 8 exports 23 dependencies

Last updated 3 months agofrom:d2c3762694. Checks:1 OK, 7 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 06 2025
R-4.5-winERRORFeb 06 2025
R-4.5-macERRORFeb 06 2025
R-4.5-linuxERRORFeb 06 2025
R-4.4-winERRORFeb 06 2025
R-4.4-macERRORFeb 06 2025
R-4.3-winERRORFeb 06 2025
R-4.3-macERRORFeb 06 2025

Exports:extractByIndexfilterScanintensityioBenchmarkMsBackendRawFileReadermzscanIndexscanType

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11formatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsrawrrRcppS4VectorssnowSpectra

On Using and Extending the MsBackendRawFileReader Backend

Tobias Kockmann, Christian Panse

Rendered fromMsBackendRawFileReader.Rmdusingknitr::rmarkdownon Feb 06 2025.

Last update: 2024-11-07
Started: 2019-06-22

Readme and manuals

Help Manual

Help pageTopics
RawFileReader_read_peaks benchmarkioBenchmark
MsBackendRawFileReaderfilterScan,MsBackendRawFileReader-method MsBackendRawFileReader scanIndex,MsBackendRawFileReader-method scanType,MsBackendRawFileReader-method
RawFileReader-based backendMsBackendRawFileReader-class