Package: MsBackendRawFileReader 1.13.1

Christian Panse

MsBackendRawFileReader: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

Authors:Christian Panse [aut, cre], Tobias Kockmann [aut], Roger Gine Bertomeu [ctb]

MsBackendRawFileReader_1.13.1.tar.gz
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MsBackendRawFileReader.pdf |MsBackendRawFileReader.html✨
MsBackendRawFileReader/json (API)
NEWS

# Install 'MsBackendRawFileReader' in R:
install.packages('MsBackendRawFileReader', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/fgcz/msbackendrawfilereader/issues

On BioConductor:MsBackendRawFileReader-1.13.1(bioc 3.21)MsBackendRawFileReader-1.12.0(bioc 3.20)

massspectrometryproteomicsmetabolomics

5.94 score 5 stars 5 scripts 212 downloads 8 exports 23 dependencies

Last updated 2 months agofrom:d2c3762694. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 08 2024
R-4.5-winERRORDec 08 2024
R-4.5-linuxERRORDec 08 2024
R-4.4-winERRORDec 08 2024
R-4.4-macERRORDec 08 2024
R-4.3-winERRORDec 08 2024
R-4.3-macERRORDec 08 2024

Exports:extractByIndexfilterScanintensityioBenchmarkMsBackendRawFileReadermzscanIndexscanType

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11formatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsrawrrRcppS4VectorssnowSpectra

On Using and Extending the MsBackendRawFileReader Backend

Tobias Kockmann, Christian Panse

Rendered fromMsBackendRawFileReader.Rmdusingknitr::rmarkdownon Dec 08 2024.

Last update: 2024-11-07
Started: 2019-06-22

Readme and manuals

Help Manual

Help pageTopics
RawFileReader_read_peaks benchmarkioBenchmark
MsBackendRawFileReaderfilterScan,MsBackendRawFileReader-method MsBackendRawFileReader scanIndex,MsBackendRawFileReader-method scanType,MsBackendRawFileReader-method
RawFileReader-based backendMsBackendRawFileReader-class