Package: MsBackendRawFileReader
Type: Package
Title: Mass Spectrometry Backend for Reading Thermo Fisher Scientific
        raw Files
Version: 1.19.0
Authors@R: c(person(given = "Christian",
    family = "Panse", email = "cp@fgcz.ethz.ch", role = c("aut", "cre"),
    comment = c(ORCID = "0000-0003-1975-3064")),
	person(given = "Tobias", family = "Kockmann",
	  email = "Tobias.Kockmann@fgcz.ethz.ch", role = "aut", 
      comment = c(ORCID = "0000-0002-1847-885X")),
    person(given = "Roger", family = "Gine Bertomeu",
      email = "roger.gine@iispv.cat", role = "ctb",
      comment = c(ORCID = "0000-0003-0288-9619")))
Depends: R (>= 4.1), methods, Spectra (>= 1.15.10)
Imports: ProtGenerics (>= 1.35.3), MsCoreUtils, S4Vectors, IRanges,
        rawrr (>= 1.17.2), utils, BiocParallel
Suggests: BiocStyle (>= 2.5), ExperimentHub, MsBackendMgf, knitr,
        lattice, mzR, protViz (>= 0.7), rmarkdown, tartare (>= 1.5),
        testthat
Description: implements a MsBackend for the Spectra package using
        Thermo Fisher Scientific's NewRawFileReader .Net libraries. The
        package is generalizing the functionality introduced by the
        rawrr package Methods defined in this package are supposed to
        extend the Spectra Bioconductor package.
URL: https://github.com/fgcz/MsBackendRawFileReader
BugReports: https://github.com/fgcz/MsBackendRawFileReader/issues
Encoding: UTF-8
NeedsCompilation: yes
biocViews: MassSpectrometry, Proteomics, Metabolomics
RoxygenNote: 7.3.2
License: GPL-3
SystemRequirements: mono-runtime 4.x or higher (including System.Data
        library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft
        Windows.
VignetteBuilder: knitr
Collate: 'hidden_aliases.R' 'AllGenerics.R'
        'MsBackendRawFileReader-functions.R' 'MsBackendRawFileReader.R'
        'benchmark.R' 'zzz.R'
Config/pak/sysreqs: cmake make libuv1-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:57:12 UTC
RemoteUrl: https://github.com/bioc/MsBackendRawFileReader
RemoteRef: HEAD
RemoteSha: f225e3459450791579be87e28100209eb4ea362c
Packaged: 2026-07-03 21:11:47 UTC; root
Author: Christian Panse [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1975-3064>),
  Tobias Kockmann [aut] (ORCID: <https://orcid.org/0000-0002-1847-885X>),
  Roger Gine Bertomeu [ctb] (ORCID:
    <https://orcid.org/0000-0003-0288-9619>)
Maintainer: Christian Panse <cp@fgcz.ethz.ch>