Package: MsBackendMgf 1.15.1

RforMassSpectrometry Package Maintainer

MsBackendMgf: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Authors:RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut], Johannes Rainer [aut], Sebastian Gibb [aut], Michael Witting [ctb], Adriano Rutz [ctb]

MsBackendMgf_1.15.1.tar.gz
MsBackendMgf_1.15.1.zip(r-4.5)MsBackendMgf_1.15.1.zip(r-4.4)MsBackendMgf_1.15.1.zip(r-4.3)
MsBackendMgf_1.15.1.tgz(r-4.4-any)MsBackendMgf_1.15.1.tgz(r-4.3-any)
MsBackendMgf_1.15.1.tar.gz(r-4.5-noble)MsBackendMgf_1.15.1.tar.gz(r-4.4-noble)
MsBackendMgf_1.15.1.tgz(r-4.4-emscripten)MsBackendMgf_1.15.1.tgz(r-4.3-emscripten)
MsBackendMgf.pdf |MsBackendMgf.html✨
MsBackendMgf/json (API)

# Install 'MsBackendMgf' in R:
install.packages('MsBackendMgf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/msbackendmgf/issues

On BioConductor:MsBackendMgf-1.15.1(bioc 3.21)MsBackendMgf-1.14.0(bioc 3.20)

infrastructureproteomicsmassspectrometrymetabolomicsdataimport

7.16 score 5 stars 3 packages 32 scripts 701 downloads 6 exports 22 dependencies

Last updated 1 months agofrom:40c14e0f2c. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 21 2024
R-4.5-winNOTEDec 21 2024
R-4.5-linuxNOTEDec 21 2024
R-4.4-winOKDec 21 2024
R-4.4-macOKDec 21 2024
R-4.3-winOKDec 21 2024
R-4.3-macOKDec 21 2024

Exports:backendInitializeexportMsBackendMgfreadMgfreadMgfSplitspectraVariableMapping

Dependencies:BHBiocGenericsBiocParallelclueclustercodetoolscpp11formatRfsfutile.loggerfutile.optionsgenericsIRangeslambda.rMASSMetaboCoreUtilsMsCoreUtilsProtGenericsRcppS4VectorssnowSpectra

Description and usage of MsBackendMgf

Rendered fromMsBackendMgf.Rmdusingknitr::rmarkdownon Dec 21 2024.

Last update: 2024-01-10
Started: 2020-04-16

Readme and manuals

Help Manual

Help pageTopics
MS data backend for mgf filesbackendInitialize,MsBackendMgf-method export,MsBackendMgf-method MsBackendMgf MsBackendMgf-class spectraVariableMapping,MsBackendMgf-method
Reading MGF filesreadMgf readMgfSplit