Package: MsBackendMgf 1.21.0

RforMassSpectrometry Package Maintainer

MsBackendMgf: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Authors:RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut], Johannes Rainer [aut], Sebastian Gibb [aut], Michael Witting [ctb], Adriano Rutz [ctb], Corey Broeckling [ctb]

MsBackendMgf_1.21.0.tar.gz
MsBackendMgf_1.21.0.zip(r-4.7)MsBackendMgf_1.21.0.zip(r-4.6)MsBackendMgf_1.21.0.zip(r-4.5)
MsBackendMgf_1.21.0.tgz(r-4.6-any)MsBackendMgf_1.21.0.tgz(r-4.5-any)
MsBackendMgf_1.21.0.tar.gz(r-4.7-any)MsBackendMgf_1.21.0.tar.gz(r-4.6-any)
MsBackendMgf_1.21.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsBackendMgf/json (API)

# Install 'MsBackendMgf' in R:

install.packages('MsBackendMgf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmgf/issues

On BioConductor:MsBackendMgf-1.21.0(bioc 3.24)MsBackendMgf-1.20.0(bioc 3.23)

infrastructure proteomics massspectrometry metabolomics dataimport

7.27 score 5 stars 2 packages 83 scripts 7 exports 23 dependencies

Last updated from:d0b312a6b6. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	166
linux-devel-x86_64	OK	198
source / vignettes	OK	240
linux-release-x86_64	OK	208
macos-release-arm64	OK	110
macos-oldrel-arm64	OK	131
windows-devel	OK	154
windows-release	OK	130
windows-oldrel	OK	169
wasm-release	OK	124

Exports:backendInitialize export MsBackendAnnotatedMgf MsBackendMgf readMgf readMgfSplit spectraVariableMapping

Dependencies:BH BiocGenerics BiocParallel clue cluster codetools cpp11 data.table formatR fs futile.logger futile.options generics IRanges lambda.r MASS MetaboCoreUtils MsCoreUtils ProtGenerics Rcpp S4Vectors snow Spectra

Description and usage of MsBackendMgf

Rendered fromMsBackendMgf.Rmdusingknitr::rmarkdown

Last update: 2025-04-07
Started: 2020-04-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
MS data backend for MGF files	backendInitialize,MsBackendAnnotatedMgf-method backendInitialize,MsBackendMgf-method export,MsBackendMgf-method MsBackendAnnotatedMgf MsBackendMgf MsBackendMgf-class spectraVariableMapping,MsBackendMgf-method
Reading MGF files	readMgf readMgfSplit