{
  "_id": "6a1ee9a8b401979e73411ddf",
  "Package": "MsBackendMgf",
  "Title": "Mass Spectrometry Data Backend for Mascot Generic Format (mgf)\nFiles",
  "Version": "1.21.0",
  "Authors@R": "c(person(given = \"RforMassSpectrometry Package Maintainer\",\nemail = \"maintainer@rformassspectrometry.org\",\nrole = \"cre\"),\nperson(given = \"Laurent\", family = \"Gatto\",\nrole = \"aut\",\nemail = \"laurent.gatto@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-1520-2268\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Sebastian\", family = \"Gibb\",\ncomment = c(ORCID = \"0000-0001-7406-4443\"),\nemail = \"mail@sebastiangibb.de\",\nrole = \"aut\"),\nperson(given = \"Michael\", family = \"Witting\",\ncomment = c(ORCID = \"0000-0002-1462-4426\"),\nemail = \"michael.witting@helmholtz-muenchen.de\",\nrole = \"ctb\"),\nperson(given = \"Adriano\", family = \"Rutz\",\ncomment = c(ORCID = \"0000-0003-0443-9902\"),\nemail = \"rutz@imsb.biol.ethz.ch\",\nrole = \"ctb\"),\nperson(given = \"Corey\", family = \"Broeckling\",\ncomment = c(ORCID = \"0000-0002-6158-827X\"),\nemail = \"Corey.Broeckling@ColoState.edu\", role = \"ctb\"))",
  "Description": "Mass spectrometry (MS) data backend supporting import and\nexport of MS/MS spectra data from Mascot Generic Format (mgf)\nfiles. Objects defined in this package are supposed to be used\nwith the Spectra Bioconductor package. This package thus adds\nmgf file support to the Spectra package.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMgf/issues",
  "URL": "https://github.com/RforMassSpectrometry/MsBackendMgf",
  "biocViews": "Infrastructure, Proteomics, MassSpectrometry, Metabolomics,\nDataImport",
  "Roxygen": "list(markdown=TRUE)",
  "RoxygenNote": "7.3.3",
  "Collate": "'hidden_aliases.R' 'MsBackendMgf.R' 'functions-mgf.R'",
  "Config/pak/sysreqs": "cmake make libuv1-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:55:14 UTC",
  "RemoteUrl": "https://github.com/bioc/MsBackendMgf",
  "RemoteRef": "HEAD",
  "RemoteSha": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-19 10:21:01 UTC",
    "User": "root"
  },
  "Author": "RforMassSpectrometry Package Maintainer [cre],\nLaurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>),\nJohannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>),\nSebastian Gibb [aut] (ORCID: <https://orcid.org/0000-0001-7406-4443>),\nMichael Witting [ctb] (ORCID: <https://orcid.org/0000-0002-1462-4426>),\nAdriano Rutz [ctb] (ORCID: <https://orcid.org/0000-0003-0443-9902>),\nCorey Broeckling [ctb] (ORCID: <https://orcid.org/0000-0002-6158-827X>)",
  "Maintainer": "RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org>",
  "MD5sum": "d7cd7d62d50e7ad76ea783354c9f29dc",
  "_user": "bioc",
  "_type": "src",
  "_file": "MsBackendMgf_1.21.0.tar.gz",
  "_fileid": "1156e5921aa848765f7ba10de09619abc4180f138e9df85ea3e552a1db6838a9",
  "_filesize": 153749,
  "_sha256": "1156e5921aa848765f7ba10de09619abc4180f138e9df85ea3e552a1db6838a9",
  "_created": "2026-05-19T10:21:01.000Z",
  "_published": "2026-06-02T14:33:12.504Z",
  "_jobs": [
    {
      "job": 79095633811,
      "time": 166,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7080886469"
    },
    {
      "job": 79095633456,
      "time": 235,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7080909722"
    },
    {
      "job": 79095634629,
      "time": 240,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7080910036"
    },
    {
      "job": 79095634365,
      "time": 119,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7080890416"
    },
    {
      "job": 79095633396,
      "time": 137,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7080882184"
    },
    {
      "job": 79095632579,
      "time": 246,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7080829575"
    },
    {
      "job": 79095632683,
      "time": 141,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7360729770"
    },
    {
      "job": 79095633739,
      "time": 140,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7080878261"
    },
    {
      "job": 79095634510,
      "time": 145,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7080879862"
    },
    {
      "job": 79095633885,
      "time": 157,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7080883950"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 6
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/MsBackendMgf",
  "_commit": {
    "id": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380914
  },
  "_maintainer": {
    "name": "RforMassSpectrometry Package Maintainer",
    "email": "maintainer@rformassspectrometry.org"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "Spectra",
      "version": ">= 1.5.14",
      "role": "Depends"
    },
    {
      "package": "ProtGenerics",
      "version": ">= 1.35.3",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "MsCoreUtils",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "version": ">= 1.1.0",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "version": ">= 2.5.19",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-10",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.21.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.20.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "infrastructure",
    "proteomics",
    "massspectrometry",
    "metabolomics",
    "dataimport"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "jorainer",
      "count": 97,
      "uuid": 5506112
    },
    {
      "user": "lgatto",
      "count": 16,
      "uuid": 384198
    },
    {
      "user": "jwokaty",
      "count": 14,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 6,
      "uuid": 2746443
    },
    {
      "user": "michaelwitting",
      "count": 3,
      "uuid": 2734706
    },
    {
      "user": "sgibb",
      "count": 2,
      "uuid": 1828443
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 922,
    "source": "https://www.bioconductor.org/packages/stats/bioc/MsBackendMgf"
  },
  "_devurl": "https://github.com/rformassspectrometry/msbackendmgf",
  "_searchresults": 83,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MsBackendMgf.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rformassspectrometry/msbackendmgf",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "backendInitialize",
    "export",
    "MsBackendAnnotatedMgf",
    "MsBackendMgf",
    "readMgf",
    "readMgfSplit",
    "spectraVariableMapping"
  ],
  "_help": [
    {
      "page": "MsBackendMgf",
      "title": "MS data backend for MGF files",
      "topics": [
        "backendInitialize,MsBackendAnnotatedMgf-method",
        "backendInitialize,MsBackendMgf-method",
        "export,MsBackendMgf-method",
        "MsBackendAnnotatedMgf",
        "MsBackendMgf",
        "MsBackendMgf-class",
        "spectraVariableMapping,MsBackendMgf-method"
      ]
    },
    {
      "page": "readMgf",
      "title": "Reading MGF files",
      "topics": [
        "readMgf",
        "readMgfSplit"
      ]
    }
  ],
  "_pkglogo": "https://github.com/bioc/MsBackendMgf/raw/HEAD/logo.png",
  "_readme": "https://github.com/bioc/MsBackendMgf/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "BiocGenerics",
    "BiocParallel",
    "clue",
    "cluster",
    "codetools",
    "cpp11",
    "data.table",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "IRanges",
    "lambda.r",
    "MASS",
    "MetaboCoreUtils",
    "MsCoreUtils",
    "ProtGenerics",
    "Rcpp",
    "S4Vectors",
    "snow",
    "Spectra"
  ],
  "_vignettes": [
    {
      "source": "MsBackendMgf.Rmd",
      "filename": "MsBackendMgf.html",
      "title": "Description and usage of MsBackendMgf",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Importing MS/MS data from MGF files",
        "Annotated MGF files",
        "Parallel processing",
        "Session information"
      ],
      "created": "2020-04-16 19:16:16",
      "modified": "2025-04-07 06:50:35",
      "commits": 12
    }
  ],
  "_score": 7.271260610487436,
  "_indexed": true,
  "_nocasepkg": "msbackendmgf",
  "_universes": [
    "bioc",
    "rformassspectrometry"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.21.0",
      "date": "2026-05-19T10:24:30.000Z",
      "distro": "noble",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "229138fb96ec154ed7516bfff5aac4f57b42354bd1380aee61ce8f11289a3a6b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.21.0",
      "date": "2026-05-19T10:24:39.000Z",
      "distro": "noble",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "19e37526d6bfb2e18769db0382dad14992f4a57713d554b4148f4cb5a5d8bdc8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.21.0",
      "date": "2026-05-19T10:23:47.000Z",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "410c233ae60ddde29de17055d34a29fc64aba47201b7d3d336f548fb6c12eefe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.21.0",
      "date": "2026-05-19T10:23:14.000Z",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "f2f244832003d1a211a858343f2e69285a6b50bea5ee4b28998eef716a3949d7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.21.0",
      "date": "2026-05-19T10:22:43.000Z",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "fe6c423aaa1042256b6a60cef41a7ee97938266f34fc0d17a3ff0cfcb823f990",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.21.0",
      "date": "2026-05-19T10:23:00.000Z",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "2650c7d4cee4cc5fe9297e85d2ae497b3c32bf0ed7fe3df88f902872f000574d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.21.0",
      "date": "2026-05-19T10:23:11.000Z",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "d15d4f9bf1dd044b264db53c86ba839c6de377fca6338e15d55a8e399ddd358c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.21.0",
      "date": "2026-06-02T14:32:46.000Z",
      "commit": "d0b312a6b6baff13b4a3177d9db95ea0c169d7fb",
      "fileid": "f0661e606dbe7b75a733e3eb0b2f877fb1b2342ec215dcb5f86d7d1ec9a66877",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26090888232"
    }
  ]
}