Introduction | Installation | Importing MS Data from MetaboLights | General information for a MetaboLights data set | Session information
Package: MsBackendMetaboLights 1.7.3
Johannes Rainer
MsBackendMetaboLights: Retrieve Mass Spectrometry Data from MetaboLights
MetaboLights is one of the main public repositories for storage of metabolomics experiments, which includes analysis results as well as raw data. The MsBackendMetaboLights package provides functionality to retrieve and represent mass spectrometry (MS) data from MetaboLights. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetaboLights package.
Authors:
MsBackendMetaboLights_1.7.3.tar.gz
MsBackendMetaboLights_1.7.3.zip(r-4.7)MsBackendMetaboLights_1.7.3.zip(r-4.6)MsBackendMetaboLights_1.7.3.zip(r-4.5)
MsBackendMetaboLights_1.7.3.tgz(r-4.6-any)MsBackendMetaboLights_1.7.3.tgz(r-4.5-any)
MsBackendMetaboLights_1.7.3.tar.gz(r-4.7-any)MsBackendMetaboLights_1.7.3.tar.gz(r-4.6-any)
MsBackendMetaboLights_1.7.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsBackendMetaboLights/json (API)
| # Install 'MsBackendMetaboLights' in R: |
| install.packages('MsBackendMetaboLights', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rformassspectrometry/msbackendmetabolights/issues
On BioConductor:MsBackendMetaboLights-1.7.1(bioc 3.24)MsBackendMetaboLights-1.6.1(bioc 3.23)
infrastructuremassspectrometrymetabolomicsdataimportproteomicsmass-spectrometrymetabolomics-data
Last updated from:d94070748a. Checks:1 NOTE, 7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 210 | ||
| linux-devel-x86_64 | ERROR | 633 | ||
| source / vignettes | OK | 264 | ||
| linux-release-x86_64 | ERROR | 655 | ||
| macos-release-arm64 | ERROR | 471 | ||
| macos-oldrel-arm64 | ERROR | 598 | ||
| windows-devel | ERROR | 746 | ||
| windows-release | ERROR | 753 | ||
| windows-oldrel | ERROR | 660 | ||
| wasm-release | OK | 141 |
Exports:backendInitializebackendRequiredSpectraVariablesMsBackendMetaboLightsmtbls_assay_datamtbls_cached_data_filesmtbls_delete_cachemtbls_ftp_pathmtbls_list_filesmtbls_metadatamtbls_sample_datamtbls_syncmtbls_sync_data_files
Dependencies:askpassBHBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemcliclueclustercodetoolscpp11crayoncurldata.tableDBIdbplyrdplyrfastmapfilelockformatRfsfutile.loggerfutile.optionsgenericsgluehmshttr2IRangeslambda.rlifecyclemagrittrMASSmemoiseMetaboCoreUtilsMsCoreUtilsopensslpillarpkgconfigprettyunitsprogressProtGenericspurrrR6rappdirsRcpprlangRSQLiteS4VectorssnowSpectrastringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Utility functions for the MetaboLights repository | MetaboLights-utils mtbls_assay_data mtbls_cached_data_files mtbls_delete_cache mtbls_ftp_path mtbls_list_files mtbls_metadata mtbls_sample_data mtbls_sync_data_files |
| MsBackend representing MS data from MetaboLights | backendInitialize,MsBackendMetaboLights-method backendRequiredSpectraVariables,MsBackendMetaboLights-method MsBackendMetaboLights MsBackendMetaboLights-class mtbls_sync |
