Package: MetaGxOvarian 1.33.0

Benjamin Haibe-Kains

MetaGxOvarian: Transcriptomic Ovarian Cancer Datasets

A collection of Ovarian Cancer Transcriptomic Datasets that are part of the MetaGxData package compendium.

Authors:Michael Zon [aut], Vandana Sandhu [aut], Christopher Eeles [ctb], Benjamin Haibe-Kains [aut, cre]

MetaGxOvarian_1.33.0.tar.gz
MetaGxOvarian_1.33.0.tar.gz(r-4.7-any)MetaGxOvarian_1.33.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MetaGxOvarian/json (API)

# Install 'MetaGxOvarian' in R:

install.packages('MetaGxOvarian', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MetaGxOvarian-1.33.0(data/experiment 3.24)MetaGxOvarian-1.32.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

expressiondata experimenthub cancerdata homo_sapiens_data arrayexpress geo nci microarraydata experimentdata datapkg

3.64 score 29 scripts 38 downloads 2 exports 69 dependencies

Last updated from:432564fa06. Checks:1 WARNING, 3 ERROR. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	170
linux-devel	ERROR	335
source / vignettes	ERROR	271
linux-release	ERROR	349

Exports:loadOvarianDatasets loadOvarianEsets

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray digest dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 impute IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Arrays S4Vectors Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
days_to_death	attention
a list containing the names of patients that are believed to be dulicates across datasets	duplicates
Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer.	E.MTAB.386
Expression analysis of stage III serous ovarian adenocarcinoma distinguishes a sub-group of survivors.	GSE12418
Gene expression profiling of advanced-stage serous ovarian cancers distinguishes novel subclasses and implicates ZEB2 in tumor progression and prognosis.	GSE12470
Survival-related profile, pathways, and transcription factors in ovarian cancer.	GSE13876
A prognostic gene expression index in ovarian cancer - validation across different independent data sets.	GSE14764
Gene expression profile for predicting survival in advanced-stage serous ovarian cancer across two independent datasets.	GSE17260
A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2.	GSE18520
Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer.	GSE19829
A genomic and transcriptomic approach for a differential diagnosis between primary and secondary ovarian carcinomas in patients with a previous history of breast cancer.	GSE20565
IGC EXpression Project for Oncology	GSE2109
miR-141 and miR-200a act on ovarian tumorigenesis by controlling oxidative stress response.	GSE26193
A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer.	GSE26712
Multidrug resistance-linked gene signature predicts overall survival of patients with primary ovarian serous carcinoma.	GSE30009
Multi-gene expression predictors of single drug responses to adjuvant chemotherapy in ovarian carcinoma: predicting platinum resistance.	GSE30161
High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.	GSE32062
High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.	GSE32063
COL11A1 promotes tumor progression and predicts poor clinical outcome in ovarian cancer.	GSE44104
Validating the impact of a molecular subtype in ovarian cancer on outcomes: a study of the OVCAD Consortium.	GSE49997
POSTN/TGFBI-associated stromal signature predicts poor prognosis in serous epithelial ovarian cancer.	GSE51088
Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis.	GSE6008
Classification of ovarian tumor samples	GSE6822
Analysis of gene expression in early-stage ovarian cancer.	GSE8842
Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome.	GSE9891
Function to load ovarian cancer SummarizedExperiment objects from the Experiment Hub	loadOvarianDatasets
Function to load ovarian cancer expression sets from the Experiment Hub	loadOvarianEsets
Patterns of gene expression that characterize long-term survival in advanced stage serous ovarian cancers.	PMID15897565
An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.	PMID17290060
Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome.	PMID19318476
Integrated genomic analyses of ovarian carcinoma.	TCGA.RNASeqV2
Integrated genomic analyses of ovarian carcinoma.	TCGAOVARIAN