{
  "_id": "6ae6ff8d2e87f76f20acc57a",
  "Package": "MetaGxOvarian",
  "Type": "Package",
  "Title": "Transcriptomic Ovarian Cancer Datasets",
  "Version": "1.33.0",
  "Date": "`r Sys.date()`",
  "Authors@R": "c(\nperson(\"Michael\", \"Zon\", role=c(\"aut\"),\nemail='michaelzon7@gmail.com'),\nperson('Vandana', 'Sandhu', role=c(\"aut\"), email='vsandhu1987@gmail.com'),\nperson('Christopher', 'Eeles', role=c('ctb'),\nemail='christopher.eeles@uhnresearch.ca'),\nperson('Benjamin', 'Haibe-Kains', role=c(\"aut\", \"cre\"),\nemail='benjamin.haibe.kains@utoronto.ca'))",
  "Description": "A collection of Ovarian Cancer Transcriptomic Datasets\nthat are part of the MetaGxData package compendium.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "biocViews": "ExpressionData, ExperimentHub, CancerData,\nHomo_sapiens_Data, ArrayExpress, GEO, NCI, MicroarrayData,\nExperimentData",
  "RoxygenNote": "7.1.1",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:31:12 UTC",
  "RemoteUrl": "https://github.com/bioc/MetaGxOvarian",
  "RemoteRef": "HEAD",
  "RemoteSha": "432564fa061f127b861e98697efe559433b29b87",
  "Packaged": {
    "Date": "2026-11-01 08:52:51 UTC",
    "User": "root"
  },
  "Author": "Michael Zon [aut],\nVandana Sandhu [aut],\nChristopher Eeles [ctb],\nBenjamin Haibe-Kains [aut, cre]",
  "Maintainer": "Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>",
  "_user": "bioc",
  "_type": "src",
  "_file": "MetaGxOvarian_1.33.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/a4eded0562000a158243ee0c6b8e4ca1446e55057077fdc057a4b688f84f14d9",
  "_filesize": 1026507,
  "_sha256": "a4eded0562000a158243ee0c6b8e4ca1446e55057077fdc057a4b688f84f14d9",
  "_expires": "2027-02-09T08:59:55.000Z",
  "_created": "2026-11-01T08:52:51.000Z",
  "_published": "2026-11-01T08:59:56.924Z",
  "_upstream": "https://github.com/bioc/MetaGxOvarian",
  "_status": "failure",
  "_maintainer": {
    "name": "Benjamin Haibe-Kains",
    "email": "benjamin.haibe.kains@utoronto.ca",
    "login": "bhaibeka",
    "description": "",
    "uuid": 594954
  },
  "_jobs": [
    {
      "job": 124801316360,
      "time": 170,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "13077306233"
    },
    {
      "job": 124801316325,
      "time": 335,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "13076628569"
    },
    {
      "job": 124801316346,
      "time": 349,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "13077825084"
    },
    {
      "job": 124800406851,
      "time": 271,
      "config": "source",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "13076599562"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 3,
    "note": 9
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41290425000",
  "_commit": {
    "id": "432564fa061f127b861e98697efe559433b29b87",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379472
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Biobase",
      "role": "Depends"
    },
    {
      "package": "AnnotationHub",
      "role": "Depends"
    },
    {
      "package": "ExperimentHub",
      "role": "Depends"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "lattice",
      "role": "Imports"
    },
    {
      "package": "impute",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "xtable",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.33.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.32.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "expressiondata",
    "experimenthub",
    "cancerdata",
    "homo_sapiens_data",
    "arrayexpress",
    "geo",
    "nci",
    "microarraydata",
    "experimentdata",
    "datapkg"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 481,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 38,
    "source": "https://www.bioconductor.org/packages/stats/bioc/MetaGxOvarian"
  },
  "_searchresults": 29,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/MetaGxOvarian.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_cranurl": false,
  "_exports": [
    "loadOvarianDatasets",
    "loadOvarianEsets"
  ],
  "_help": [
    {
      "page": "attention",
      "title": "days_to_death",
      "topics": [
        "attention"
      ]
    },
    {
      "page": "duplicates",
      "title": "a list containing the names of patients that are believed to be dulicates across datasets",
      "topics": [
        "duplicates"
      ]
    },
    {
      "page": "E.MTAB.386",
      "title": "Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer.",
      "topics": [
        "E.MTAB.386"
      ]
    },
    {
      "page": "GSE12418",
      "title": "Expression analysis of stage III serous ovarian adenocarcinoma distinguishes a sub-group of survivors.",
      "topics": [
        "GSE12418"
      ]
    },
    {
      "page": "GSE12470",
      "title": "Gene expression profiling of advanced-stage serous ovarian cancers distinguishes novel subclasses and implicates ZEB2 in tumor progression and prognosis.",
      "topics": [
        "GSE12470"
      ]
    },
    {
      "page": "GSE13876",
      "title": "Survival-related profile, pathways, and transcription factors in ovarian cancer.",
      "topics": [
        "GSE13876"
      ]
    },
    {
      "page": "GSE14764",
      "title": "A prognostic gene expression index in ovarian cancer - validation across different independent data sets.",
      "topics": [
        "GSE14764"
      ]
    },
    {
      "page": "GSE17260",
      "title": "Gene expression profile for predicting survival in advanced-stage serous ovarian cancer across two independent datasets.",
      "topics": [
        "GSE17260"
      ]
    },
    {
      "page": "GSE18520",
      "title": "A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2.",
      "topics": [
        "GSE18520"
      ]
    },
    {
      "page": "GSE19829",
      "title": "Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer.",
      "topics": [
        "GSE19829"
      ]
    },
    {
      "page": "GSE20565",
      "title": "A genomic and transcriptomic approach for a differential diagnosis between primary and secondary ovarian carcinomas in patients with a previous history of breast cancer.",
      "topics": [
        "GSE20565"
      ]
    },
    {
      "page": "GSE2109",
      "title": "IGC EXpression Project for Oncology",
      "topics": [
        "GSE2109"
      ]
    },
    {
      "page": "GSE26193",
      "title": "miR-141 and miR-200a act on ovarian tumorigenesis by controlling oxidative stress response.",
      "topics": [
        "GSE26193"
      ]
    },
    {
      "page": "GSE26712",
      "title": "A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer.",
      "topics": [
        "GSE26712"
      ]
    },
    {
      "page": "GSE30009",
      "title": "Multidrug resistance-linked gene signature predicts overall survival of patients with primary ovarian serous carcinoma.",
      "topics": [
        "GSE30009"
      ]
    },
    {
      "page": "GSE30161",
      "title": "Multi-gene expression predictors of single drug responses to adjuvant chemotherapy in ovarian carcinoma: predicting platinum resistance.",
      "topics": [
        "GSE30161"
      ]
    },
    {
      "page": "GSE32062",
      "title": "High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.",
      "topics": [
        "GSE32062"
      ]
    },
    {
      "page": "GSE32063",
      "title": "High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.",
      "topics": [
        "GSE32063"
      ]
    },
    {
      "page": "GSE44104",
      "title": "COL11A1 promotes tumor progression and predicts poor clinical outcome in ovarian cancer.",
      "topics": [
        "GSE44104"
      ]
    },
    {
      "page": "GSE49997",
      "title": "Validating the impact of a molecular subtype in ovarian cancer on outcomes: a study of the OVCAD Consortium.",
      "topics": [
        "GSE49997"
      ]
    },
    {
      "page": "GSE51088",
      "title": "POSTN/TGFBI-associated stromal signature predicts poor prognosis in serous epithelial ovarian cancer.",
      "topics": [
        "GSE51088"
      ]
    },
    {
      "page": "GSE6008",
      "title": "Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis.",
      "topics": [
        "GSE6008"
      ]
    },
    {
      "page": "GSE6822",
      "title": "Classification of ovarian tumor samples",
      "topics": [
        "GSE6822"
      ]
    },
    {
      "page": "GSE8842",
      "title": "Analysis of gene expression in early-stage ovarian cancer.",
      "topics": [
        "GSE8842"
      ]
    },
    {
      "page": "GSE9891",
      "title": "Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome.",
      "topics": [
        "GSE9891"
      ]
    },
    {
      "page": "loadOvarianDatasets",
      "title": "Function to load ovarian cancer SummarizedExperiment objects from the Experiment Hub",
      "topics": [
        "loadOvarianDatasets"
      ]
    },
    {
      "page": "loadOvarianEsets",
      "title": "Function to load ovarian cancer expression sets from the Experiment Hub",
      "topics": [
        "loadOvarianEsets"
      ]
    },
    {
      "page": "PMID15897565",
      "title": "Patterns of gene expression that characterize long-term survival in advanced stage serous ovarian cancers.",
      "topics": [
        "PMID15897565"
      ]
    },
    {
      "page": "PMID17290060",
      "title": "An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.",
      "topics": [
        "PMID17290060"
      ]
    },
    {
      "page": "PMID19318476",
      "title": "Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome.",
      "topics": [
        "PMID19318476"
      ]
    },
    {
      "page": "TCGA.RNASeqV2",
      "title": "Integrated genomic analyses of ovarian carcinoma.",
      "topics": [
        "TCGA.RNASeqV2"
      ]
    },
    {
      "page": "TCGAOVARIAN",
      "title": "Integrated genomic analyses of ovarian carcinoma.",
      "topics": [
        "TCGAOVARIAN"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/MetaGxOvarian/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "digest",
    "dplyr",
    "ExperimentHub",
    "fastmap",
    "filelock",
    "generics",
    "GenomicRanges",
    "glue",
    "httr",
    "httr2",
    "impute",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml"
  ],
  "_score": 3.638489256954637,
  "_indexed": true,
  "_nocasepkg": "metagxovarian",
  "_universes": [
    "bioc",
    "bhaibeka"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.33.0",
      "date": "2026-11-01T08:57:04.000Z",
      "distro": "resolute",
      "commit": "432564fa061f127b861e98697efe559433b29b87",
      "fileid": "https://r2.ropensci.org/7f2361060ad93469f2c6496d6d050473bdaf2dad3e8a6ca06ee53b45819a6296",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41290425000"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.33.0",
      "date": "2026-11-01T08:57:09.000Z",
      "distro": "resolute",
      "commit": "432564fa061f127b861e98697efe559433b29b87",
      "fileid": "https://r2.ropensci.org/3bb5ffbadac320d5aa5b6a0713913e26a78253d581880bae95398184ba5f98c3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41290425000"
    }
  ]
}