Package: MSTree 0.99.6

Abdullah El-Kurdi

MSTree: MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline

This package is used to generate a graph object from the output of chewBBACA pipeline (https://chewbbaca.readthedocs.io/en/latest/). Then, the generated graph object can be used to make a minimum spanning tree (MST). The minimum spanning tree can be customized using all the available arguments. This package consists of two functions: one to build the graph and another one for plotting.

Authors:Abdullah El-Kurdi [aut, cre]

MSTree_0.99.6.tar.gz

MSTree_0.99.6.tgz(r-4.6-any)MSTree_0.99.6.tgz(r-4.5-any)
MSTree_0.99.6.tar.gz(r-4.7-any)MSTree_0.99.6.tar.gz(r-4.6-any)
MSTree_0.99.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MSTree/json (API)

# Install 'MSTree' in R:

install.packages('MSTree', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MSTree-0.99.6(bioc 3.24)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

comparativegenomics genomicvariation clustering

3.48 score 2 exports 51 dependencies

Last updated from:08cdc18339. Checks:1 NOTE, 6 OK, 3 FAIL. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	162
linux-devel-x86_64	OK	206
source / vignettes	OK	213
linux-release-x86_64	OK	211
macos-release-arm64	OK	119
macos-oldrel-arm64	OK	93
windows-devel	FAIL	121
windows-release	FAIL	96
windows-oldrel	FAIL	109
wasm-release	OK	114

Exports:makeGraphFromChewBBACA PlotMST

Dependencies:base64enc cachem cli cpp11 dplyr farver fastmap generics ggforce ggplot2 ggraph ggrepel glue graphlayouts gridExtra gtable igraph isoband jsonlite labeling lattice lifecycle magrittr MASS Matrix memoise NetPathMiner pillar pkgconfig polyclip purrr R6 RColorBrewer Rcpp RcppArmadillo rlang S7 scales stringi stringr systemfonts tibble tidygraph tidyr tidyselect tweenr utf8 vctrs viridis viridisLite withr

MSTree: Building Minimum Spanning Tree (MST) from chewBBACA pipeline output

Introduction | Overview | Example | Session information

Rendered fromMSTree_vignette.Rmdusingknitr::rmarkdown

Last update: 2026-05-11
Started: 2026-02-09

Help page	Topics
MSTree R package	makeGraphFromChewBBACA
MSTree R package	PlotMST

Package: MSTree 0.99.6

MSTree: MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline

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