Package: MSTree
Title: MSTree plotting minimum spanning tree directly from the output
        of ChewBBACA pipeline
Version: 0.99.6
Authors@R: 
    person("Abdullah", "El-Kurdi", , "ak161@aub.edu.lb", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8321-4025"))
Description: This package is used to generate a graph object from the
        output of chewBBACA pipeline
        (https://chewbbaca.readthedocs.io/en/latest/). Then, the
        generated graph object can be used to make a minimum spanning
        tree (MST). The minimum spanning tree can be customized using
        all the available arguments. This package consists of two
        functions: one to build the graph and another one for plotting.
License: Artistic-2.0
Imports: igraph, ggraph, ggplot2, utils, methods, NetPathMiner
Suggests: RUnit, testthat, BiocGenerics, BiocStyle, knitr, rmarkdown
biocViews: ComparativeGenomics, GenomicVariation, Clustering
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        libicu-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-15 10:44:33 UTC
RemoteUrl: https://github.com/bioc/MSTree
RemoteRef: HEAD
RemoteSha: 08cdc1833921fa67b40aaaa275cd641f8a8f02e0
NeedsCompilation: no
Packaged: 2026-06-23 10:21:49 UTC; root
Author: Abdullah El-Kurdi [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8321-4025>)
Maintainer: Abdullah El-Kurdi <ak161@aub.edu.lb>