Package: MOGAMUN 1.17.0

Elva-María Novoa-del-Toro

MOGAMUN: MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Authors:Elva-María Novoa-del-Toro [aut, cre]

MOGAMUN_1.17.0.tar.gz
MOGAMUN_1.17.0.zip(r-4.5)MOGAMUN_1.17.0.zip(r-4.4)MOGAMUN_1.17.0.zip(r-4.3)
MOGAMUN_1.17.0.tgz(r-4.4-any)MOGAMUN_1.17.0.tgz(r-4.3-any)
MOGAMUN_1.17.0.tar.gz(r-4.5-noble)MOGAMUN_1.17.0.tar.gz(r-4.4-noble)
MOGAMUN_1.17.0.tgz(r-4.4-emscripten)MOGAMUN_1.17.0.tgz(r-4.3-emscripten)
MOGAMUN.pdf |MOGAMUN.html
MOGAMUN/json (API)
NEWS

# Install 'MOGAMUN' in R:
install.packages('MOGAMUN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/elvanov/mogamun/issues

On BioConductor:MOGAMUN-1.17.0(bioc 3.21)MOGAMUN-1.16.0(bioc 3.20)

systemsbiologygraphandnetworkdifferentialexpressionbiomedicalinformaticstranscriptomicsclusteringnetwork

6.03 score 12 stars 5 scripts 152 downloads 3 mentions 4 exports 60 dependencies

Last updated 2 months agofrom:cb76f5210e. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-winOKNov 29 2024
R-4.5-linuxOKNov 29 2024
R-4.4-winOKNov 29 2024
R-4.4-macOKNov 29 2024
R-4.3-winOKNov 29 2024
R-4.3-macOKNov 29 2024

Exports:mogamun_initmogamun_load_datamogamun_postprocessmogamun_run

Dependencies:askpassbackportsbase64encbase64urlBHBiocGenericsBiocParallelbitopscaToolsclicodetoolscpp11crayoncurldigestevaluatefansifastmapformatRfsfutile.loggerfutile.optionsgenericsgluegplotsgraphgtoolshtmltoolshttrigraphIRdisplayIRkerneljsonliteKernSmoothlambda.rlatticelifecyclemagrittrMatrixmimeopensslpbdZMQpillarpkgconfigR6RColorBrewerRCurlRCy3reprRJSONIOrlangRUnitsnowstringistringrsysutf8uuidvctrsXML

MOGAMUN

Rendered fromMOGAMUN_Vignette.Rmdusingknitr::knitron Nov 29 2024.

Last update: 2021-02-12
Started: 2020-08-14

Readme and manuals

Help Manual

Help pageTopics
mogamun_initmogamun_init
mogamun_load_datamogamun_load_data
mogamun_postprocessmogamun_postprocess
mogamun_runmogamun_run