{
  "_id": "6aae333b3d719c1f840793b4",
  "Package": "MOGAMUN",
  "Type": "Package",
  "Title": "MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active\nModules in Multiplex Biological Networks",
  "Version": "1.23.0",
  "Authors@R": "person(\"Elva-María\", \"Novoa-del-Toro\", role=c(\"aut\", \"cre\"),\nemail=\"elvanov@hotmail.com\", comment=c(ORCID = \"0000-0002-6135-5839\"))",
  "Description": "MOGAMUN is a multi-objective genetic algorithm that\nidentifies active modules in a multiplex biological network.\nThis allows analyzing different biological networks at the same\ntime. MOGAMUN is based on NSGA-II (Non-Dominated Sorting\nGenetic Algorithm, version II), which we adapted to work on\nnetworks.",
  "License": "GPL-3 + file LICENSE",
  "Encoding": "UTF-8",
  "biocViews": "SystemsBiology, GraphAndNetwork, DifferentialExpression,\nBiomedicalInformatics, Transcriptomics, Clustering, Network",
  "URL": "https://github.com/elvanov/MOGAMUN",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev python3 libzmq3-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:54:09 UTC",
  "RemoteUrl": "https://github.com/bioc/MOGAMUN",
  "RemoteRef": "HEAD",
  "RemoteSha": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-19 06:37:27 UTC",
    "User": "root"
  },
  "Author": "Elva-María Novoa-del-Toro [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6135-5839>)",
  "Maintainer": "Elva-María Novoa-del-Toro <elvanov@hotmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "MOGAMUN_1.23.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/91885f41dc50be6eb849bdfa7abd65dd1292d64ee654ab6115c96f8092380c17",
  "_filesize": 218249,
  "_sha256": "91885f41dc50be6eb849bdfa7abd65dd1292d64ee654ab6115c96f8092380c17",
  "_expires": "2026-12-28T07:01:13.000Z",
  "_created": "2026-09-19T06:37:27.000Z",
  "_published": "2026-09-19T07:01:15.561Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 8
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279",
  "_status": "success",
  "_upstream": "https://github.com/bioc/MOGAMUN",
  "_commit": {
    "id": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380849
  },
  "_maintainer": {
    "name": "Elva-María Novoa-del-Toro",
    "email": "elvanov@hotmail.com",
    "login": "elvanov",
    "description": "",
    "uuid": 14836082,
    "orcid": "0000-0002-6135-5839"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 105854901996,
      "time": 159,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "10579646797"
    },
    {
      "job": 105854901984,
      "time": 217,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10578249862"
    },
    {
      "job": 105854901973,
      "time": 209,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10579536949"
    },
    {
      "job": 105854901963,
      "time": 126,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "10580225523"
    },
    {
      "job": 105854901944,
      "time": 96,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10579593205"
    },
    {
      "job": 105854390350,
      "time": 260,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10579771383"
    },
    {
      "job": 105854901991,
      "time": 152,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10579870006"
    },
    {
      "job": 105854902029,
      "time": 109,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10579411896"
    },
    {
      "job": 105854901977,
      "time": 99,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "10579581849"
    },
    {
      "job": 105854901981,
      "time": 115,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10579666733"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "RCy3",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.23.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.22.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "systemsbiology",
    "graphandnetwork",
    "differentialexpression",
    "biomedicalinformatics",
    "transcriptomics",
    "clustering",
    "network"
  ],
  "_stars": 13,
  "_contributors": [
    {
      "user": "elvanov",
      "count": 153,
      "uuid": 14836082
    },
    {
      "user": "sneumann",
      "count": 6,
      "uuid": 195385
    },
    {
      "user": "nturaga",
      "count": 2,
      "uuid": 2746443
    },
    {
      "user": "laurent-tichit",
      "count": 1,
      "uuid": 7203403
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 468,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 360,
    "source": "https://www.bioconductor.org/packages/stats/bioc/MOGAMUN"
  },
  "_mentions": 3,
  "_devurl": "https://github.com/elvanov/mogamun",
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/MOGAMUN.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/elvanov/mogamun",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "mogamun_init",
    "mogamun_load_data",
    "mogamun_postprocess",
    "mogamun_run"
  ],
  "_help": [
    {
      "page": "mogamun_init",
      "title": "mogamun_init",
      "topics": [
        "mogamun_init"
      ]
    },
    {
      "page": "mogamun_load_data",
      "title": "mogamun_load_data",
      "topics": [
        "mogamun_load_data"
      ]
    },
    {
      "page": "mogamun_postprocess",
      "title": "mogamun_postprocess",
      "topics": [
        "mogamun_postprocess"
      ]
    },
    {
      "page": "mogamun_run",
      "title": "mogamun_run",
      "topics": [
        "mogamun_run"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/MOGAMUN/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "backports",
    "base64enc",
    "base64url",
    "BH",
    "BiocGenerics",
    "BiocParallel",
    "bitops",
    "caTools",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "digest",
    "evaluate",
    "fastmap",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "glue",
    "gplots",
    "graph",
    "gtools",
    "htmltools",
    "httr",
    "igraph",
    "IRdisplay",
    "IRkernel",
    "jsonlite",
    "KernSmooth",
    "lambda.r",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "mime",
    "openssl",
    "pbdZMQ",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "RCurl",
    "RCy3",
    "repr",
    "RJSONIO",
    "rlang",
    "RUnit",
    "snow",
    "stringi",
    "stringr",
    "sys",
    "utf8",
    "uuid",
    "vctrs",
    "XML"
  ],
  "_vignettes": [
    {
      "source": "MOGAMUN_Vignette.Rmd",
      "filename": "MOGAMUN_Vignette.html",
      "title": "MOGAMUN",
      "author": "Elva María Novoa del Toro",
      "engine": "knitr::knitr",
      "headings": [
        "Introduction",
        "Workflow",
        "Initialization of parameters",
        "Providing input data",
        "Running the algorithm",
        "Postprocessing of the results"
      ],
      "created": "2020-08-14 14:06:33",
      "modified": "2021-02-12 14:15:27",
      "commits": 24
    }
  ],
  "_score": 6.068185861746162,
  "_indexed": true,
  "_nocasepkg": "mogamun",
  "_universes": [
    "bioc",
    "elvanov"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.23.0",
      "date": "2026-09-19T06:40:47.000Z",
      "distro": "resolute",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/3b10951fbdd08424ab11c2671dbb055bb24d06a6f08bca7ac2b0341db64aeac3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.23.0",
      "date": "2026-09-19T06:40:41.000Z",
      "distro": "resolute",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/7e35249f85488aecde2c942ff271726d93f683f1c4e49e9e61c254af0212acf8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.23.0",
      "date": "2026-09-19T07:00:12.000Z",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/caaf77ba274ff7b7a70a97672c03f7458a9893d8d258e43714f58bcff57b5557",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.23.0",
      "date": "2026-09-19T06:59:20.000Z",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/c17e08ff1cf40a6576bbe86fa911b650019123644c127428170af49d54efc5b6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.23.0",
      "date": "2026-09-19T06:40:19.000Z",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/cd3046db3a95aaf4e3613dcc8f816fea6e2c802faadee6a6664313478da97761",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-09-19T06:39:08.000Z",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/21f1f2defbe58c3d56b290bf34105e213d099570067ea1d759a4c030e085e892",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-09-19T06:38:53.000Z",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/0880217fa74989e29b6a65f1da3384a5981276881bef130025923f0e08cf36ac",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-09-19T06:39:11.000Z",
      "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195",
      "fileid": "https://r2.ropensci.org/dcc521712e4e0ace5d0ceaff783e152c5b7133724c3f78481c3aebb7e47fd1dd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/35426878279"
    }
  ]
}