{ "_id": "6ad5c6ecd423e4b0c576c548", "Package": "MOGAMUN", "Type": "Package", "Title": "MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active\nModules in Multiplex Biological Networks", "Version": "1.23.0", "Authors@R": "person(\"Elva-María\", \"Novoa-del-Toro\", role=c(\"aut\", \"cre\"),\nemail=\"elvanov@hotmail.com\", comment=c(ORCID = \"0000-0002-6135-5839\"))", "Description": "MOGAMUN is a multi-objective genetic algorithm that\nidentifies active modules in a multiplex biological network.\nThis allows analyzing different biological networks at the same\ntime. MOGAMUN is based on NSGA-II (Non-Dominated Sorting\nGenetic Algorithm, version II), which we adapted to work on\nnetworks.", "License": "GPL-3 + file LICENSE", "Encoding": "UTF-8", "biocViews": "SystemsBiology, GraphAndNetwork, DifferentialExpression,\nBiomedicalInformatics, Transcriptomics, Clustering, Network", "URL": "https://github.com/elvanov/MOGAMUN", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev python3 libzmq3-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:54:09 UTC", "RemoteUrl": "https://github.com/bioc/MOGAMUN", "RemoteRef": "HEAD", "RemoteSha": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-19 07:12:09 UTC", "User": "root" }, "Author": "Elva-María Novoa-del-Toro [aut, cre] (ORCID:\n)", "Maintainer": "Elva-María Novoa-del-Toro ", "_user": "bioc", "_type": "src", "_file": "MOGAMUN_1.23.0.tar.gz", "_fileid": "https://r2.ropensci.org/859db18df7d0118ef17975ce0c2e8ddbc88bd06a0f6be8dd2341afb78f2c203d", "_filesize": 212626, "_sha256": "859db18df7d0118ef17975ce0c2e8ddbc88bd06a0f6be8dd2341afb78f2c203d", "_expires": "2027-01-27T07:29:47.000Z", "_created": "2026-10-19T07:12:09.000Z", "_published": "2026-10-19T07:29:48.801Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796", "_status": "failure", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 1, "note": 8 }, "_upstream": "https://github.com/bioc/MOGAMUN", "_commit": { "id": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380849 }, "_maintainer": { "name": "Elva-María Novoa-del-Toro", "email": "elvanov@hotmail.com", "login": "elvanov", "description": "", "uuid": 14836082, "orcid": "0000-0002-6135-5839" }, "_distro": "resolute", "_jobs": [ { "job": 117935114570, "time": 146, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "12169465881" }, { "job": 117935114583, "time": 236, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12168508653" }, { "job": 117935114637, "time": 192, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "12169585657" }, { "job": 117935114681, "time": 125, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "12170200024" }, { "job": 117935114690, "time": 127, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12169727256" }, { "job": 117933057985, "time": 364, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "12169061800" }, { "job": 117935114535, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12169047115" }, { "job": 117935114736, "time": 112, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12168682826" }, { "job": 117935114586, "time": 113, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "12168489950" }, { "job": 117935114716, "time": 113, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12168489951" } ], "_registered": true, "_dependencies": [ { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "RCy3", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "RUnit", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.23.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.22.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "systemsbiology", "graphandnetwork", "differentialexpression", "biomedicalinformatics", "transcriptomics", "clustering", "network" ], "_stars": 13, "_contributors": [ { "user": "elvanov", "count": 153, "uuid": 14836082 }, { "user": "sneumann", "count": 6, "uuid": 195385 }, { "user": "nturaga", "count": 2, "uuid": 2746443 }, { "user": "laurent-tichit", "count": 1, "uuid": 7203403 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 478, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 408, "source": "https://www.bioconductor.org/packages/stats/bioc/MOGAMUN" }, "_mentions": 3, "_devurl": "https://github.com/elvanov/mogamun", "_searchresults": 7, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/MOGAMUN.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/elvanov/mogamun", "_realowner": "bioc", "_cranurl": false, "_exports": [ "mogamun_init", "mogamun_load_data", "mogamun_postprocess", "mogamun_run" ], "_help": [ { "page": "mogamun_init", "title": "mogamun_init", "topics": [ "mogamun_init" ] }, { "page": "mogamun_load_data", "title": "mogamun_load_data", "topics": [ "mogamun_load_data" ] }, { "page": "mogamun_postprocess", "title": "mogamun_postprocess", "topics": [ "mogamun_postprocess" ] }, { "page": "mogamun_run", "title": "mogamun_run", "topics": [ "mogamun_run" ] } ], "_readme": "https://github.com/bioc/MOGAMUN/raw/HEAD/README.md", "_rundeps": [ "askpass", "backports", "base64enc", "base64url", "BH", "BiocGenerics", "BiocParallel", "bitops", "caTools", "cli", "codetools", "cpp11", "crayon", "curl", "digest", "evaluate", "fastmap", "formatR", "fs", "futile.logger", "futile.options", "generics", "glue", "gplots", "graph", "gtools", "htmltools", "httr", "igraph", "IRdisplay", "IRkernel", "jsonlite", "KernSmooth", "lambda.r", "lattice", "lifecycle", "magrittr", "Matrix", "mime", "openssl", "pbdZMQ", "pillar", "pkgconfig", "R6", "RColorBrewer", "RCurl", "RCy3", "repr", "RJSONIO", "rlang", "RUnit", "snow", "stringi", "stringr", "sys", "utf8", "uuid", "vctrs", "XML" ], "_score": 5.068185861746162, "_indexed": true, "_nocasepkg": "mogamun", "_universes": [ "bioc", "elvanov" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.23.0", "date": "2026-10-19T07:15:59.000Z", "distro": "resolute", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/377223b6735813e586a9846df15ed14eeceff5e9cb76d38ec774a98252c77ad4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.6.1", "os": "linux", "version": "1.23.0", "date": "2026-10-19T07:15:12.000Z", "distro": "resolute", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/c343bf5b347cfe7eb1cd06a473065ded3ed9c4bd89ba613da5b19a65cb123aac", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.5.3", "os": "mac", "version": "1.23.0", "date": "2026-10-19T07:28:57.000Z", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/18abc2aa683c88fe1d1be33a1e79771e5f8eeb1863a7430a0541845690450865", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.6.1", "os": "mac", "version": "1.23.0", "date": "2026-10-19T07:28:54.000Z", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/cebe6ab7dbec2515917fc5a6f44e124d641df877e37ba4900be4de856da0b601", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.6.0", "os": "wasm", "version": "1.23.0", "date": "2026-10-19T07:14:32.000Z", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/62d23351d766758c238b7529c309e3f39535b458eb439da423cb503ce2101b51", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.7.0", "os": "win", "version": "1.23.0", "date": "2026-10-19T07:13:37.000Z", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/29f4ccc8f7bc46ef55cf7a8c5c4223c4c92342f8ba6fe486facdfbcd9154f604", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.5.3", "os": "win", "version": "1.23.0", "date": "2026-10-19T07:13:42.000Z", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/c01d497d305707fd1aefb5aaf327d1b5ed0fbfce59a081766ddf8d152b832116", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" }, { "r": "4.6.1", "os": "win", "version": "1.23.0", "date": "2026-10-19T07:13:40.000Z", "commit": "4e05af7661ded6e2de7995fbc6c51da3017e8195", "fileid": "https://r2.ropensci.org/12ca8bfda1f6d3262fb0f6ae27d85367076e90ce201e69281a1e248daba0aee5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/39213804796" } ] }