Package: MACSr 1.21.1
Qiang Hu
MACSr: MACS: Model-based Analysis for ChIP-Seq
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
Authors:
MACSr_1.21.1.tar.gz
MACSr_1.21.1.zip(r-4.7)MACSr_1.21.1.zip(r-4.6)MACSr_1.21.1.zip(r-4.5)
MACSr_1.21.1.tgz(r-4.6-any)MACSr_1.21.1.tgz(r-4.5-any)
MACSr_1.21.1.tar.gz(r-4.7-any)MACSr_1.21.1.tar.gz(r-4.6-any)
MACSr_1.21.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MACSr/json (API)
NEWS
| # Install 'MACSr' in R: |
| install.packages('MACSr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MACSr-1.21.0(bioc 3.24)MACSr-1.20.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarechipseqatacseqimmunooncology
Last updated from:af3b8214c6. Checks:4 ERROR, 4 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 166 | ||
| linux-devel-x86_64 | NOTE | 936 | ||
| source / vignettes | OK | 950 | ||
| linux-release-x86_64 | NOTE | 1023 | ||
| macos-release-arm64 | NOTE | 885 | ||
| macos-oldrel-arm64 | NOTE | 713 | ||
| windows-devel | ERROR | 1412 | ||
| windows-release | ERROR | 1473 | ||
| windows-oldrel | ERROR | 1502 | ||
| wasm-release | OK | 134 |
Exports:bdgbroadcallbdgcmpbdgdiffbdgoptbdgpeakcallcallpeakcallvarcmbrepsfilterduphmmratacpileuppredictdrandsamplerefinepeak
Dependencies:AnnotationDbiAnnotationHubaskpassbasiliskBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdir.expirydplyrExperimentHubfastmapfilelockgenericsglueherehttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsRcppRcppTOMLreticulaterlangrprojrootRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| bdgbroadcall | bdgbroadcall |
| bdgcmp | bdgcmp |
| bdgdiff | bdgdiff |
| bdgopt | bdgopt |
| bdgpeakcall | bdgpeakcall |
| callpeak | callpeak |
| callvar | callvar |
| cmbreps | cmbreps |
| filterdup | filterdup |
| hmmratac | hmmratac |
| macsList | macsList-class |
| MACSr | MACSr-package MACSr |
| pileup | pileup |
| predictd | predictd |
| randsample | randsample |
| refinepeak | refinepeak |
