Package: MACSr 1.15.0
Qiang Hu
MACSr: MACS: Model-based Analysis for ChIP-Seq
The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.
Authors:
MACSr_1.15.0.tar.gz
MACSr_1.15.0.zip(r-4.5)MACSr_1.15.0.zip(r-4.4)MACSr_1.15.0.zip(r-4.3)
MACSr_1.15.0.tgz(r-4.4-any)MACSr_1.15.0.tgz(r-4.3-any)
MACSr_1.15.0.tar.gz(r-4.5-noble)MACSr_1.15.0.tar.gz(r-4.4-noble)
MACSr_1.15.0.tgz(r-4.4-emscripten)MACSr_1.15.0.tgz(r-4.3-emscripten)
MACSr.pdf |MACSr.html✨
MACSr/json (API)
NEWS
| # Install 'MACSr' in R: |
| install.packages('MACSr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MACSr-1.15.0(bioc 3.21)MACSr-1.14.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwarechipseqatacseqimmunooncology
Last updated 2 months agofrom:260457d34d. Checks:OK: 1 NOTE: 3 ERROR: 3. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | ERROR | Nov 29 2024 |
| R-4.5-linux | NOTE | Nov 29 2024 |
| R-4.4-win | ERROR | Nov 29 2024 |
| R-4.4-mac | NOTE | Nov 29 2024 |
| R-4.3-win | ERROR | Nov 29 2024 |
| R-4.3-mac | NOTE | Nov 29 2024 |
Exports:bdgbroadcallbdgcmpbdgdiffbdgoptbdgpeakcallcallpeakcallvarcmbrepsfilterduphmmratacpileuppredictdrandsamplerefinepeak
Dependencies:AnnotationDbiAnnotationHubaskpassbasiliskbasilisk.utilsBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdir.expirydplyrExperimentHubfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataglueherehttrIRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslpillarpkgconfigplogrpngpurrrR6rappdirsRcppRcppTOMLreticulaterlangrprojrootRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| bdgbroadcall | bdgbroadcall |
| bdgcmp | bdgcmp |
| bdgdiff | bdgdiff |
| bdgopt | bdgopt |
| bdgpeakcall | bdgpeakcall |
| callpeak | callpeak |
| callvar | callvar |
| cmbreps | cmbreps |
| filterdup | filterdup |
| hmmratac | hmmratac |
| macsList | macsList-class |
| MACSr | MACSr-package MACSr |
| pileup | pileup |
| predictd | predictd |
| randsample | randsample |
| refinepeak | refinepeak |
