{
  "_id": "6a1a14af1d7bb097a09ce447",
  "Package": "MACSr",
  "Title": "MACS: Model-based Analysis for ChIP-Seq",
  "Version": "1.21.1",
  "Authors@R": "c(\nperson(given = \"Philippa\",\nfamily = \"Doherty\",\nrole = c(\"aut\"),\nemail = \"Philippa.Doherty@roswellpark.org\"),\nperson(given = \"Qiang\",\nfamily = \"Hu\",\nrole = c(\"aut\", \"cre\"),\nemail = \"Qiang.Hu@roswellpark.org\")\n)",
  "Description": "The Model-based Analysis of ChIP-Seq (MACS) is a widely\nused toolkit for identifying transcript factor binding sites.\nThis package is an R wrapper of the lastest MACS3.",
  "License": "BSD_3_clause + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "PythonRequirements": "Python (>= 3.9.0), macs3",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, ChIPSeq, ATACSeq, ImmunoOncology",
  "StagedInstall": "no",
  "Config/Bioconductor/UnsupportedPlatforms": "windows",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev python3 zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-05-29 18:37:30 UTC",
  "RemoteUrl": "https://github.com/bioc/MACSr",
  "RemoteRef": "HEAD",
  "RemoteSha": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 22:09:36 UTC",
    "User": "root"
  },
  "Author": "Philippa Doherty [aut],\nQiang Hu [aut, cre]",
  "Maintainer": "Qiang Hu <Qiang.Hu@roswellpark.org>",
  "MD5sum": "67eb452506aa991f6a2d0e751dacf496",
  "_user": "bioc",
  "_type": "src",
  "_file": "MACSr_1.21.1.tar.gz",
  "_fileid": "e945e201f43d85b67735a2f817ff22b46f0c501d534042b4d1fe42dccf72eb29",
  "_filesize": 5147782,
  "_sha256": "e945e201f43d85b67735a2f817ff22b46f0c501d534042b4d1fe42dccf72eb29",
  "_created": "2026-05-29T22:09:36.000Z",
  "_published": "2026-05-29T22:35:27.384Z",
  "_jobs": [
    {
      "job": 78595575944,
      "time": 166,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7302125271"
    },
    {
      "job": 78595575966,
      "time": 936,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7302299620"
    },
    {
      "job": 78595575979,
      "time": 1023,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7302318669"
    },
    {
      "job": 78595575976,
      "time": 713,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7302249809"
    },
    {
      "job": 78595575949,
      "time": 885,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7302288342"
    },
    {
      "job": 78593677281,
      "time": 950,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7302084762"
    },
    {
      "job": 78595575990,
      "time": 134,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7302117985"
    },
    {
      "job": 78595575967,
      "time": 1412,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7302400787"
    },
    {
      "job": 78595575940,
      "time": 1502,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7302419264"
    },
    {
      "job": 78595575969,
      "time": 1473,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7302413463"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 13
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/MACSr",
  "_commit": {
    "id": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
    "author": "A Wokaty <awokaty@users.noreply.github.com>",
    "committer": "A Wokaty <awokaty@users.noreply.github.com>",
    "message": "Bump version\n",
    "time": 1780079850
  },
  "_maintainer": {
    "name": "Qiang Hu",
    "email": "qiang.hu@roswellpark.org",
    "login": "hubentu",
    "description": "",
    "uuid": 9856666
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "basilisk",
      "role": "Imports"
    },
    {
      "package": "ExperimentHub",
      "role": "Imports"
    },
    {
      "package": "AnnotationHub",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "MACSdata",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-22",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.21.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.20.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "chipseq",
    "atacseq",
    "immunooncology"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 352,
    "source": "https://www.bioconductor.org/packages/stats/bioc/MACSr"
  },
  "_searchresults": 32,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MACSr.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "bdgbroadcall",
    "bdgcmp",
    "bdgdiff",
    "bdgopt",
    "bdgpeakcall",
    "callpeak",
    "callvar",
    "cmbreps",
    "filterdup",
    "hmmratac",
    "pileup",
    "predictd",
    "randsample",
    "refinepeak"
  ],
  "_help": [
    {
      "page": "bdgbroadcall",
      "title": "bdgbroadcall",
      "topics": [
        "bdgbroadcall"
      ]
    },
    {
      "page": "bdgcmp",
      "title": "bdgcmp",
      "topics": [
        "bdgcmp"
      ]
    },
    {
      "page": "bdgdiff",
      "title": "bdgdiff",
      "topics": [
        "bdgdiff"
      ]
    },
    {
      "page": "bdgopt",
      "title": "bdgopt",
      "topics": [
        "bdgopt"
      ]
    },
    {
      "page": "bdgpeakcall",
      "title": "bdgpeakcall",
      "topics": [
        "bdgpeakcall"
      ]
    },
    {
      "page": "callpeak",
      "title": "callpeak",
      "topics": [
        "callpeak"
      ]
    },
    {
      "page": "callvar",
      "title": "callvar",
      "topics": [
        "callvar"
      ]
    },
    {
      "page": "cmbreps",
      "title": "cmbreps",
      "topics": [
        "cmbreps"
      ]
    },
    {
      "page": "filterdup",
      "title": "filterdup",
      "topics": [
        "filterdup"
      ]
    },
    {
      "page": "hmmratac",
      "title": "hmmratac",
      "topics": [
        "hmmratac"
      ]
    },
    {
      "page": "macsList-class",
      "title": "macsList",
      "topics": [
        "macsList-class"
      ]
    },
    {
      "page": "MACSr",
      "title": "MACSr",
      "topics": [
        "MACSr-package",
        "MACSr"
      ]
    },
    {
      "page": "pileup",
      "title": "pileup",
      "topics": [
        "pileup"
      ]
    },
    {
      "page": "predictd",
      "title": "predictd",
      "topics": [
        "predictd"
      ]
    },
    {
      "page": "randsample",
      "title": "randsample",
      "topics": [
        "randsample"
      ]
    },
    {
      "page": "refinepeak",
      "title": "refinepeak",
      "topics": [
        "refinepeak"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/MACSr/raw/HEAD/README.md",
  "_rundeps": [
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "basilisk",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dir.expiry",
    "dplyr",
    "ExperimentHub",
    "fastmap",
    "filelock",
    "generics",
    "glue",
    "here",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rprojroot",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "MACSr.Rmd",
      "filename": "MACSr.html",
      "title": "MACSr",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Load the package",
        "Usage",
        "MACS3 functions",
        "Function callpeak",
        "The macsList class",
        "Resources",
        "SessionInfo"
      ],
      "created": "2020-12-06 05:22:26",
      "modified": "2023-11-20 16:30:46",
      "commits": 5
    }
  ],
  "_score": 4.681241237375588,
  "_indexed": true,
  "_nocasepkg": "macsr",
  "_universes": [
    "bioc",
    "hubentu"
  ],
  "_previous": "1.21.0",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.21.1",
      "date": "2026-05-29T22:12:58.000Z",
      "distro": "noble",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "b27a8a0f6230e27368690b95abb37adcd348be34e6623dc188681f7f10a34d29",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.21.1",
      "date": "2026-05-29T22:12:33.000Z",
      "distro": "noble",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "7db6ee7ae931faecbf7c67c5524d6713b2c645c1fe8e60c27bddc8048363d831",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.21.1",
      "date": "2026-05-29T22:11:33.000Z",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "95bbc5784084dccf947d275a432f5918baee301ad6e7caf722b03b3d9a028b20",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.21.1",
      "date": "2026-05-29T22:12:11.000Z",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "49f8c3c48cb76a1df4cab5293477ce17bda6f5c0ad1d2f04da54f0f9e92cfae2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.21.1",
      "date": "2026-05-29T22:12:19.000Z",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "3781ad4b97b69ef2e99d5da0f8d0b4ee514e137da5b54d915906699637090a12",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.21.1",
      "date": "2026-05-29T22:11:26.000Z",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "66ce28fbfbadc6032d973cc42fc0d1c80600ee56e77167111bb0070e3eb4f07c",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.21.1",
      "date": "2026-05-29T22:11:27.000Z",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "e0ed3ba94fca0a7c92c5c573d2d8f828d30f54965540920e7ca6c136396b97df",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.21.1",
      "date": "2026-05-29T22:11:20.000Z",
      "commit": "af3b8214c67d0e6f8f95fb29fa85f991c4618dee",
      "fileid": "91fd7870683b99487610dd6fe905d7575d2f8788f9d49ee6623682bdde27c4f0",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26664166940"
    }
  ]
}