Package: Lheuristic 1.5.0

Sanchez Pla Alex

Lheuristic: Detection of scatterplots with L-shaped pattern

The Lheuristic package identifies scatterpots that follow and L-shaped, negative distribution. It can be used to identify genes regulated by methylation by integration of an expression and a methylation array. The package uses two different methods to detect expression and methyaltion L- shapped scatterplots. The parameters can be changed to detect other scatterplot patterns.

Authors:Sanchez Pla Alex [aut, cre], Miro Cau Berta [aut]

Lheuristic_1.5.0.tar.gz
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Lheuristic_1.5.0.tgz(r-4.6-any)Lheuristic_1.5.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
Lheuristic/json (API)
NEWS

# Install 'Lheuristic' in R:
install.packages('Lheuristic', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aspresearch/lheuristic/issues

Datasets:
  • TCGAexpression - Expression data matrix obtained from TCGA, TCGA-COAD dataset
  • TCGAmethylation - Methylation data matrix obtained from TCGA, TCGA-COAD dataset

On BioConductor:Lheuristic-1.5.0(bioc 3.24)Lheuristic-1.4.0(bioc 3.23)

dnamethylationstatisticalmethodmethylationarrayl-shapedmethylation-expressionscatterplot-matrix

4.00 score 8 scripts 225 downloads 13 exports 124 dependencies

Last updated from:6f0f0ae984. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE193
linux-devel-x86_64NOTE358
source / vignettesOK257
linux-release-x86_64NOTE338
macos-release-arm64NOTE254
macos-oldrel-arm64NOTE151
windows-develNOTE229
windows-releaseNOTE250
windows-oldrelNOTE279
wasm-releaseOK146

Exports:binScorecalcFreqscheckPairingcorrelationSelectionlhCreateMAEmatCorrsmessageTitlenumScoreplotGeneByNameplotGeneSelplotGenesMatscoreGenesMattoReqMat

Dependencies:abindbackportsbase64encBiobaseBiocBaseUtilsBiocGenericsbootbroombslibcachemcarcarDatacheckmatecliclustercolorspacecorrplotcowplotcpp11data.tableDelayedArrayDerivdigestdoBydplyrenergyevaluatefarverfastmapfontawesomeforecastforeignFormulafracdifffsgenericsGenomicRangesggplot2ggpubrggrepelggsciggsignifgluegridExtragslgtablehighrHmischtmlTablehtmltoolshtmlwidgetsIRangesisobandjquerylibjsonliteknitrlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrMultiAssayExperimentnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpolynompurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrpartrstatixrstudioapiS4ArraysS4VectorsS7sassscalesSeqinfoSparseArraySparseMstringistringrSummarizedExperimentsurvivaltibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisLitewithrxfunXVectoryamlzoo

L-shaped selection from expression and methylation data

Berta Miro Cau and Alex Sánchez-Pla

Rendered fromvignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-03-28
Started: 2018-06-11