Package: LRDE 0.99.6

Ziyang Liu

LRDE: Differential Expression Analysis with Long Read RNA-Seq Data

Provides hurdle negative binomial models for differential expression analysis with long-read RNA-Seq data.

Authors:Ziyang Liu [aut, cre], Hongxu Ding [aut, fnd]

# Install 'LRDE' in R:

install.packages('LRDE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:LRDE-1.1.0(bioc 3.24)LRDE-0.99.6(bioc 3.23)

Last updated from:449980e0de. Checks:1 NOTE, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	167
linux-devel-x86_64	OK	281
source / vignettes	OK	201
linux-release-x86_64	OK	283
macos-release-arm64	OK	144
macos-oldrel-arm64	OK	122
windows-devel	OK	181
windows-release	OK	152
windows-oldrel	OK	155
wasm-release	OK	100

Ziyang Liu, Hongxu Ding

Last update: 2026-04-08
Started: 2026-03-19

Help page	Topics
LRDE: Differential Expression Analysis for Long-Read RNA-Seq Data	LRDE-package LRDE
Likelihood Ratio Test for Hurdle Negative Binomial Model	hurdle_LRT
Wald Test for Hurdle Negative Binomial Model	hurdle_Wald_Test
Prepare Count Data for Differential Expression Analysis	prepareDGE
Estimate Size Factors for Normalization	sizeFactorsEst
Tag-wise Dispersion Estimation for Hurdle Negative Binomial Model	tagwiseEst