Package: HPAanalyze 1.31.0

Anh Nhat Tran

HPAanalyze: Retrieve and analyze data from the Human Protein Atlas

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data. HPAanalyze is designed to fullfill 3 main tasks: (1) Import, subsetting and export downloadable datasets; (2) Visualization of downloadable datasets for exploratory analysis; and (3) Working with the individual XML files. This package aims to serve researchers with little programming experience, but also allow power users to use the imported data as desired.

Authors:Anh Nhat Tran [aut, cre]

HPAanalyze_1.31.0.tar.gz
HPAanalyze_1.31.0.zip(r-4.7)HPAanalyze_1.31.0.zip(r-4.6)HPAanalyze_1.31.0.zip(r-4.5)
HPAanalyze_1.31.0.tgz(r-4.6-any)HPAanalyze_1.31.0.tgz(r-4.5-any)
HPAanalyze_1.31.0.tar.gz(r-4.7-any)HPAanalyze_1.31.0.tar.gz(r-4.6-any)
HPAanalyze_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
HPAanalyze/json (API)
NEWS

# Install 'HPAanalyze' in R:
install.packages('HPAanalyze', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anhtr/hpaanalyze/issues

Datasets:

On BioConductor:HPAanalyze-1.31.0(bioc 3.24)HPAanalyze-1.30.0(bioc 3.23)

proteomicscellbiologyvisualizationsoftware

7.82 score 39 stars 40 scripts 546 downloads 1 mentions 14 exports 31 dependencies

Last updated from:9926657cf2. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING189
linux-devel-x86_64NOTE263
source / vignettesOK235
linux-release-x86_64NOTE201
macos-release-arm64NOTE134
macos-oldrel-arm64NOTE109
windows-develNOTE142
windows-releaseNOTE148
windows-oldrelNOTE138
wasm-releaseOK134

Exports:hpaDownloadhpaExporthpaListParamhpaSubsethpaVishpaVisPathohpaVisSubcellhpaVisTissuehpaXmlhpaXmlAntibodyhpaXmlGethpaXmlProtClasshpaXmlTissueExprhpaXmlTissueExprSum

Dependencies:clicpp11dplyrfarvergenericsggplot2gluegridExtragtableisobandlabelinglifecyclemagrittropenxlsxpillarpkgconfigR6RColorBrewerRcpprlangS7scalesstringitibbletidyselectutf8vctrsviridisLitewithrxml2zip

Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze

Anh N. Tran

Rendered froma_HPAanalyze_quick_start.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08

In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze

Anh N. Tran

Rendered fromb_HPAanalyze_indepth.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08

Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries

Anh N. Tran

Rendered fromc_HPAanalyze_case_query.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08

Tutorial: Working with Human Protein Atlas (HPA) xml files offline

Anh N. Tran

Rendered fromd_HPAanalyze_case_offline_xml.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08

Tutorial: Export Human Protein Atlas (HPA) data as JSON

Anh N. Tran

Rendered frome_HPAanalyze_case_json.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08

Tutorial: Download histology images from the Human Protein Atlas

Anh N. Tran

Rendered fromf_HPAanalyze_case_images.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08

Code for figures from HPAanalyze paper

Anh N. Tran

Rendered fromz_HPAanalyze_paper_figures.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-05-28
Started: 2019-11-08