NEWS

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HPAanalyze 1.19

• Changes in version 1.19.0 + Starting devel for Bioconductor 3.18
• Changes in version 1.19.1 + Bug fix: Correct url for rna_tissue_consensus

HPAanalyze 1.17

• Changes in version 1.17.0 + Starting devel for Bioconductor 3.17
• Changes in version 1.17.1 + Update built-in data to version 22.0.
• Changes in version 1.17.2 + Update HPA download to correctly download new version 22.0 data. + Update documentation.

HPAanalyze 1.15

• Changes in version 1.15.1 + Update built-in data to HPA version 21.1.
• Changes in version 1.15.0 + Starting devel for Bioconductor 3.16

HPAanalyze 1.13

• Changes in version 1.13.1 + Update built-in data to HPA version 21.0.
• Changes in version 1.13.0 + Starting devel for Bioconductor 3.15

HPAanalyze 1.9

• Changes in version 1.9.5 + hpaVisTissue now plots all tissues by default + hpaDownload shortcuts for downloadList arg can now be combined + Bug fixes and performance improvements
• Changes in version 1.9.4 + hpaVisPatho can now facet by cancers or genes + Vignettes update + Bug fixes and performance improvements
• Changes in version 1.9.3 + Update the default color to be more accessible (based on viridis::magma) + Updated hpaSubset and hpaListParam to work properly with new data
• Changes in version 1.9.2 + hpaDownload can now download every downloadable datasets from HPA. + Update built-in data to HPA version 20.1.
• Changes in version 1.9.1 + Update built-in data to HPA version 20.
• Changes in version 1.9.0 + Starting devel for Bioconductor 3.13

HPAanalyze 1.5

• Changes in version 1.5.3 + Update built-in data to HPA version 19.
• Changes in version 1.5.2 + Minor bug fixes.
• Changes in version 1.5.1 + Add documentation with pkgdown. Minor updates to documentation. + tidyr and readr dependencies have been replaced with base R solutions. + Importing data from hpar is no longer supported. + hpaDownload function was updated to correctly download data in HPA version 19.
• Changes in version 1.5.0 + Starting devel for Bioconductor 3.10

HPAanalyze 1.4

• Changes in version 1.4.0 + Official relase in Bioconductor 3.10

HPAanalyze 1.3

• Changes in version 1.3.3 + Fix sn error introduced in version 1.3.2 where hpaVisPatho plotted incorrectly. + Added a vignette with codes for figures in the HPAanalyze manuscript.
• Changes in version 1.3.2 + To reduce dependency, hpaVis now use gridExtra for multiple plots instead of cowplot + Removed dependency on reshape2
• Changes in version 1.3.1 + hpaExport is now supporting csv and tsv. + Support for JSON export is added via vignette. + Fix the error where hpaXmlGet give an error when curl is not installed. + Most functions with now take both HGNC gene names and ensemble ids. + hpaVisSubcell now allows user to choose reliability scores. + Removed dependency on magrittr
• Changes in version 1.3.0 + Starting devel for Bioconductor 3.10

HPAanalyze 1.2

• Changes in version 1.2.0 + Official relase in Bioconductor 3.9

HPAanalyze 1.1

• Changes in version 1.1.5 + Reformatted NEWS file.
• Changes in version 1.1.4 + Added the query vignette.
• Changes in version 1.1.3 + Fixed issues where hpaVis and hpaXml give faulty output. + All hpaVis functions as well as hpaListParam and hpaSubset now use the bundled dataset by defauft if no data argument is specifed. + All hpaVis functions now have default for all of their arguments and will create a warning message when the defaults are used. + The in-depth vignette was rewritten, and new vignettes added for ease of use. + Updated the themes of hpaVis functions for better clarity. + Updated documentations. + Hex sticker is now available.
• Changes in version 1.1.1 + HPAanalyze now uses openxlsx for hpaExport() instead of XLConnect.
• Changes in version 1.1.0 + Starting devel for Bioconductor 3.9

HPAanalyze 1.0

• Changes in version 1.0.0 + Official relase in Bioconductor 3.8

HPAanalyze 0.99

• Changes in version 0.99.19 + Update CITATION
• Changes in version 0.99.18 + Add 'journal' to CITATION + Add '+ file LICENSE' to DESCRIPTION
• Changes in version 0.99.17 + Standardize the NEWS file + Add CITATION file
• Changes in version 0.99.16 + Update License. Now use GPL-3 instead of MIT.
• Changes in version 0.99.14 + Replace visType == 'all' in hpaVis() with identical(visType, 'all') + Replace extractType == 'all' in hpaXml() with identical(extractType, 'all')
• Changes in version 0.99.13 + Fix example for hpaXml() (issue #5) + Update documentation for hpa_downloaded_histology_v18 dataset (issue #6) + Re-name R/data.R to R/hpa_downloaded_histology_v18.R (issue #7) + Cross-reference documentations (issues #8, #9) + Combining hpaListParam() and hpaSubset() on one man page (issue #10)
• Changes in version 0.99.12 + Minor edit in hpaXml() function
• Changes in version 0.99.11 + Add the hpaVis() function as an umbrella for the whole function family + Add the hpaXml() function as an umbrella for all XML extraction + Remove the ignore/ directory + Import individual functions for xml2 + Remove /dontrun{} on man pages + Modifications to hpaVis functions for better consistency + Updated the help files with details about output of each function
• Changes in version 0.99.10 + Initital version reviewed by Bioconductor