Introduction
Package: GeneMeta 1.85.0
Bioconductor Package Maintainer
GeneMeta: MetaAnalysis for High Throughput Experiments
A collection of meta-analysis tools for analysing high throughput experimental data
Authors:
GeneMeta_1.85.0.tar.gz
GeneMeta_1.85.0.zip(r-4.7)GeneMeta_1.85.0.zip(r-4.6)GeneMeta_1.85.0.zip(r-4.5)
GeneMeta_1.85.0.tgz(r-4.6-any)GeneMeta_1.85.0.tgz(r-4.5-any)
GeneMeta_1.85.0.tar.gz(r-4.7-any)GeneMeta_1.85.0.tar.gz(r-4.6-any)
GeneMeta_1.85.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GeneMeta/json (API)
| # Install 'GeneMeta' in R: |
| install.packages('GeneMeta', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Nevins - Intensity data for 46 Affymetrix slides with tissue samples of breast tumors
On BioConductor:GeneMeta-1.85.0(bioc 3.24)GeneMeta-1.84.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencinggeneexpressionmicroarray
Last updated from:d8fcaa2ac3. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 149 | ||
| linux-devel-x86_64 | NOTE | 190 | ||
| source / vignettes | OK | 187 | ||
| linux-release-x86_64 | NOTE | 188 | ||
| macos-release-arm64 | NOTE | 114 | ||
| macos-oldrel-arm64 | NOTE | 108 | ||
| windows-devel | NOTE | 118 | ||
| windows-release | NOTE | 119 | ||
| windows-oldrel | NOTE | 110 | ||
| wasm-release | OK | 116 |
Exports:CountPlotdstarf.QgetdFIDRplotmu.tau2multExpFDRsigmadtau2.DLvar.tau2zScoreFDRzScorePermutedzScores
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenefiltergenericsgluehttrIRangesjsonliteKEGGRESTlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosurvivalsysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plots for Meta-analysis of gene expression data. | CountPlot IDRplot |
| Tools for Meta-analysis of gene expression data. | dstar getdF getdF,ExpressionSet,numeric-method getdF,matrix,numeric-method sigmad |
| Compute Cochran's Q statistic | f.Q |
| Intensity data for 46 Affymetrix slides with tissue samples of breast tumors | Nevins |
| estimating my and tau in a REM | mu.tau2 tau2.DL var.tau2 |
| Tools for Meta-analysis of gene expression data. | multExpFDR zScoreFDR zScorePermuted zScores |
