Package: GeneMeta 1.79.0
Bioconductor Package Maintainer
GeneMeta: MetaAnalysis for High Throughput Experiments
A collection of meta-analysis tools for analysing high throughput experimental data
Authors:
GeneMeta_1.79.0.tar.gz
GeneMeta_1.79.0.zip(r-4.5)GeneMeta_1.79.0.zip(r-4.4)GeneMeta_1.79.0.zip(r-4.3)
GeneMeta_1.79.0.tgz(r-4.4-any)GeneMeta_1.79.0.tgz(r-4.3-any)
GeneMeta_1.79.0.tar.gz(r-4.5-noble)GeneMeta_1.79.0.tar.gz(r-4.4-noble)
GeneMeta_1.79.0.tgz(r-4.4-emscripten)GeneMeta_1.79.0.tgz(r-4.3-emscripten)
GeneMeta.pdf |GeneMeta.html✨
GeneMeta/json (API)
| # Install 'GeneMeta' in R: |
| install.packages('GeneMeta', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- Nevins - Intensity data for 46 Affymetrix slides with tissue samples of breast tumors
On BioConductor:GeneMeta-1.79.0(bioc 3.21)GeneMeta-1.78.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
sequencinggeneexpressionmicroarray
Last updated 2 months agofrom:7798817f85. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 29 2024 |
| R-4.5-win | NOTE | Nov 29 2024 |
| R-4.5-linux | NOTE | Nov 29 2024 |
| R-4.4-win | NOTE | Nov 29 2024 |
| R-4.4-mac | NOTE | Nov 29 2024 |
| R-4.3-win | NOTE | Nov 29 2024 |
| R-4.3-mac | NOTE | Nov 29 2024 |
Exports:CountPlotdstarf.QgetdFIDRplotmu.tau2multExpFDRsigmadtau2.DLvar.tau2zScoreFDRzScorePermutedzScores
Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenefiltergenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Plots for Meta-analysis of gene expression data. | CountPlot IDRplot |
| Tools for Meta-analysis of gene expression data. | dstar getdF getdF,ExpressionSet,numeric-method getdF,matrix,numeric-method sigmad |
| Compute Cochran's Q statistic | f.Q |
| Intensity data for 46 Affymetrix slides with tissue samples of breast tumors | Nevins |
| estimating my and tau in a REM | mu.tau2 tau2.DL var.tau2 |
| Tools for Meta-analysis of gene expression data. | multExpFDR zScoreFDR zScorePermuted zScores |
