{ "_id": "6ae74faf2e87f76f20acce78", "Package": "GeneMeta", "Title": "MetaAnalysis for High Throughput Experiments", "Version": "1.85.0", "Author": "Lara Lusa , R. Gentleman, M. Ruschhaupt", "Description": "A collection of meta-analysis tools for analysing high\nthroughput experimental data", "Maintainer": "Bioconductor Package Maintainer\n", "License": "Artistic-2.0", "LazyLoad": "yes", "biocViews": "Sequencing, GeneExpression, Microarray", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:31:13 UTC", "RemoteUrl": "https://github.com/bioc/GeneMeta", "RemoteRef": "HEAD", "RemoteSha": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-01 13:17:05 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "GeneMeta_1.85.0.tar.gz", "_fileid": "https://r2.ropensci.org/24e372970a135bdcbbc678d985b83a8b6e09a287d1ef933348cde4b0b650d6a8", "_filesize": 2857027, "_sha256": "24e372970a135bdcbbc678d985b83a8b6e09a287d1ef933348cde4b0b650d6a8", "_expires": "2027-02-09T14:41:48.000Z", "_created": "2026-11-01T13:17:05.000Z", "_published": "2026-11-01T14:41:50.829Z", "_upstream": "https://github.com/bioc/GeneMeta", "_status": "success", "_maintainer": { "name": "Bioconductor Package Maintainer", "email": "maintainer@bioconductor.org", "login": "bioconductor-bot", "description": "", "uuid": 11681645 }, "_jobs": [ { "job": 124859823902, "time": 138, "config": "bioc-checks", "r": "4.6.2", "check": "ERROR", "artifact": "13086360991" }, { "job": 124859823907, "time": 207, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086126754" }, { "job": 124859823989, "time": 278, "config": "linux-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13086037137" }, { "job": 124859824008, "time": 124, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13086944123" }, { "job": 124859823962, "time": 156, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13087990937" }, { "job": 124857380830, "time": 208, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13085356457" }, { "job": 124859823945, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13086510205" }, { "job": 124859823995, "time": 115, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13085357029" }, { "job": 124859824026, "time": 110, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13084633928" }, { "job": 124859824060, "time": 106, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13085267586" } ], "_bioccheck": { "error": 2, "warning": 4, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364", "_commit": { "id": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379473 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "Biobase", "version": ">= 2.5.5", "role": "Depends" }, { "package": "genefilter", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "Biobase", "version": ">= 2.5.5", "role": "Imports" }, { "package": "RColorBrewer", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.85.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.84.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "sequencing", "geneexpression", "microarray" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 830, "source": "https://www.bioconductor.org/packages/stats/bioc/GeneMeta" }, "_mentions": 19, "_searchresults": 2, "_abi": { "exports": [ { "key": "GeneMeta::generic:getdF", "hash": "8e6daae6aa27c9dc" } ], "imports": [] }, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GeneMeta.html", "extra/manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "CountPlot", "dstar", "f.Q", "getdF", "IDRplot", "mu.tau2", "multExpFDR", "sigmad", "tau2.DL", "var.tau2", "zScoreFDR", "zScorePermuted", "zScores" ], "_datasets": [ { "name": "Nevins", "title": "Intensity data for 46 Affymetrix slides with tissue samples of breast tumors", "object": "Nevins", "file": "Nevins.RData", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "CountPlot", "title": "Plots for Meta-analysis of gene expression data.", "topics": [ "CountPlot", "IDRplot" ] }, { "page": "dstar", "title": "Tools for Meta-analysis of gene expression data.", "topics": [ "dstar", "getdF", "getdF,ExpressionSet,numeric-method", "getdF,matrix,numeric-method", "sigmad" ] }, { "page": "f.Q", "title": "Compute Cochran's Q statistic", "topics": [ "f.Q" ] }, { "page": "Nevins", "title": "Intensity data for 46 Affymetrix slides with tissue samples of breast tumors", "topics": [ "Nevins" ] }, { "page": "tau", "title": "estimating my and tau in a REM", "topics": [ "mu.tau2", "tau2.DL", "var.tau2" ] }, { "page": "zscore", "title": "Tools for Meta-analysis of gene expression data.", "topics": [ "multExpFDR", "zScoreFDR", "zScorePermuted", "zScores" ] } ], "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocBaseUtils", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "genefilter", "generics", "glue", "httr", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "mime", "openssl", "pkgconfig", "png", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "survival", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "GeneMeta.Rnw", "filename": "GeneMeta.pdf", "title": "GeneMeta Vignette", "engine": "utils::Sweave", "headings": [ "Introduction" ], "created": "2013-10-25 21:19:52", "modified": "2013-10-25 21:19:52", "commits": 1 } ], "_score": 4.778151250383644, "_indexed": true, "_nocasepkg": "genemeta", "_universes": [ "bioc", "bioconductor-bot" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.85.0", "date": "2026-11-01T13:40:56.000Z", "distro": "resolute", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/21320f8e8be6347a4c47f6c743391dc9311ed13c9056abc70f4f85095c3f2547", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.6.2", "os": "linux", "version": "1.85.0", "date": "2026-11-01T13:42:14.000Z", "distro": "resolute", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/bcb1fec7df593a6178b69db348dd9a19855ea445c34b3bff29392704b9cf51fe", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.5.3", "os": "mac", "version": "1.85.0", "date": "2026-11-01T14:28:40.000Z", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/36db1e9dd2aba1460c6c37a7916d9c7f6d56a069268fe4c92c83652d53a7514d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.6.2", "os": "mac", "version": "1.85.0", "date": "2026-11-01T14:36:51.000Z", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/bbfa425440f8c12f42fbadeccbd70f3dceed40c2f17f3e2e3d632e006a751f83", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.6.0", "os": "wasm", "version": "1.85.0", "date": "2026-11-01T13:40:22.000Z", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/712f125c6c90bdfea7e70298a44050d5f06672c9631862bc3c235440e666c35c", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.7.0", "os": "win", "version": "1.85.0", "date": "2026-11-01T13:20:11.000Z", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/e8d67842a8a08684608fcb067bb6f256d6aaf051074674b73caf4998d09c64f5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.5.3", "os": "win", "version": "1.85.0", "date": "2026-11-01T13:20:09.000Z", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/92e7dfc1374f0fd6d643f04020a720bdaa084a2e5c85bb4d8c466a90c2ff90b3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" }, { "r": "4.6.2", "os": "win", "version": "1.85.0", "date": "2026-11-01T13:20:07.000Z", "commit": "d8fcaa2ac31bcffff0c90169e9fd859f2f41a158", "fileid": "https://r2.ropensci.org/f81100691a5d4e9f5b3af4f204c00f934b4690958e4039779e51b5e572c98e3e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309043364" } ] }