Package: GSALightning 1.35.0
Billy Heung Wing Chang
GSALightning: Fast Permutation-based Gene Set Analysis
GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
Authors:
GSALightning_1.35.0.tar.gz
GSALightning_1.35.0.zip(r-4.5)GSALightning_1.35.0.zip(r-4.4)GSALightning_1.35.0.zip(r-4.3)
GSALightning_1.35.0.tgz(r-4.4-any)GSALightning_1.35.0.tgz(r-4.3-any)
GSALightning_1.35.0.tar.gz(r-4.5-noble)GSALightning_1.35.0.tar.gz(r-4.4-noble)
GSALightning_1.35.0.tgz(r-4.4-emscripten)GSALightning_1.35.0.tgz(r-4.3-emscripten)
GSALightning.pdf |GSALightning.html✨
GSALightning/json (API)
NEWS
| # Install 'GSALightning' in R: |
| install.packages('GSALightning', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/billyhw/gsalightning/issues
- expression - Breast Cancer Data from The Cancer Genome Atlas
- sampleInfo - Sample Information for the Breast Cancer Data from The Cancer Genome Atlas
- targetGenes - Target Genes of Distal Regulatory Elements
On BioConductor:GSALightning-1.35.0(bioc 3.21)GSALightning-1.34.0(bioc 3.20)
softwarebiologicalquestiongenesetenrichmentdifferentialexpressiongeneexpressiontranscription
Last updated 2 months agofrom:7414410a31. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-win | NOTE | Dec 18 2024 |
| R-4.5-linux | NOTE | Dec 18 2024 |
| R-4.4-win | NOTE | Dec 18 2024 |
| R-4.4-mac | NOTE | Dec 18 2024 |
| R-4.3-win | NOTE | Dec 18 2024 |
| R-4.3-mac | NOTE | Dec 18 2024 |
Exports:GSALightpermTestLightwilcoxTest
Dependencies:data.tablelatticeMatrix
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fast Permutation-based Gene Set Analysis | GSALightning-package GSALightning |
| Breast Cancer Data from The Cancer Genome Atlas (TCGA) | expression |
| Fast Permutation-based Gene Set Analysis | GSALight |
| Fast Single-Gene Permutation Test | permTestLight |
| Sample Information for the Breast Cancer Data from The Cancer Genome Atlas (TCGA) | sampleInfo |
| Target Genes of Distal Regulatory Elements | targetGenes |
| Single-Gene Mann Whitney Wilcoxon Test | wilcoxTest |
