Package: GSALightning 1.33.0

Billy Heung Wing Chang

GSALightning: Fast Permutation-based Gene Set Analysis

GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.

Authors:Billy Heung Wing Chang

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GSALightning.pdf |GSALightning.html✨
GSALightning/json (API)
NEWS

# Install 'GSALightning' in R:
install.packages('GSALightning', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/billyhw/gsalightning/issues

Datasets:
  • expression - Breast Cancer Data from The Cancer Genome Atlas
  • sampleInfo - Sample Information for the Breast Cancer Data from The Cancer Genome Atlas
  • targetGenes - Target Genes of Distal Regulatory Elements

On BioConductor:GSALightning-1.33.0(bioc 3.20)GSALightning-1.32.0(bioc 3.19)

bioconductor-package

3 exports 0.82 score 3 dependencies

Last updated 2 months agofrom:c5e3e488a2

Exports:GSALightpermTestLightwilcoxTest

Dependencies:data.tablelatticeMatrix

GSALightning: Ultra-fast Permutation-based Gene Set Analysis

Billy Heung Wing Chang

Rendered fromvignette.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2016-06-13
Started: 2016-01-07