NEWS

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GSALightning 1.1.6

Fixed default settings of permTestLight() by adding match.args and setting nperm=NULL

GSALightning 1.1.5

Updated references and manual and vignette

Added Github URL

GSALightning 1.1.3

Bioconductor version updates

GSALightning 1.1.2

Added “importFrom("stats", "p.adjust", "rbinom", "var", "wilcox.test”)” to NAMESPACE

Import “stats” in description

Added back manual for “wilcoxTest

GSALightning 1.1.1

Codes

Added “maxmean” statistics

Added “wilcoxTest” for Mann-Whitney-U tests for single gene analysis

Default for GSALight() is now “maxmean” with restandardization

Fix some issues to make GSALight() equivalent to GSA of Efron and Tibshirani

The target gene list is now a list instead of a data table

The Vignette now contains a comprehensive user guide

All documentations are updated accordingly

GSALightning 0.99.3

Codes

All comments removed

• ' \n' are removed at end of messages, or the space before '\n' are removed.

GSALightning 0.99.2

Codes

Added calls to match.args() for partial matching

Added calls to isTRUE() for checking logical inputs

Replaces cat() with message

Vignette

Tabs are replaced by spaces

Added some math notations

R Dependency

Package built using R-devel version 3.3.0

R Dependecy updated to R (>= 3.3.0) in preparation for next Bioconductor release

GSALightning 0.99.0

Initial package submitted