Package: GNOSIS 1.3.0

Lydia King

GNOSIS: Genomics explorer using statistical and survival analysis in R

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Authors:Lydia King [aut, cre], Marcel Ramos [ctb]

GNOSIS_1.3.0.tar.gz
GNOSIS_1.3.0.zip(r-4.5)GNOSIS_1.3.0.zip(r-4.4)GNOSIS_1.3.0.zip(r-4.3)
GNOSIS_1.3.0.tgz(r-4.4-any)GNOSIS_1.3.0.tgz(r-4.3-any)
GNOSIS_1.3.0.tar.gz(r-4.5-noble)GNOSIS_1.3.0.tar.gz(r-4.4-noble)
GNOSIS_1.3.0.tgz(r-4.4-emscripten)GNOSIS_1.3.0.tgz(r-4.3-emscripten)
GNOSIS.pdf |GNOSIS.html✨
GNOSIS/json (API)
NEWS

# Install 'GNOSIS' in R:

install.packages('GNOSIS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lydia-king/gnosis/issues

On BioConductor:GNOSIS-1.3.0(bioc 3.20)GNOSIS-1.2.0(bioc 3.19)

bioconductor-package

1 exports 0.82 score 282 dependencies

Last updated 2 months agofrom:c79d86778c

Exports:GNOSIS

Dependencies:abind AnnotationDbi AnVIL anytime askpass backports base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel Biostrings bit bit64 bitops blob boot broom bslib cachem callr car carData cBioPortalData cellranger chron class cli clipr codetools colorspace commonmark compareGroups conflicted corrplot cowplot cpp11 crayon crosstalk crul curl dashboardthemes data.table DBI dbplyr DelayedArray Deriv DescTools digest DNAcopy doBy dplyr DT dtplyr e1071 evaluate Exact exactRankTests expm fabricatr fansi farver fastmap filelock flextable fontawesome fontBitstreamVera fontLiberation fontquiver forcats foreach formatR Formula fresh fs futile.logger futile.options gargle gdtools generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicDataCommons GenomicFeatures GenomicRanges gfonts ggplot2 ggpubr ggrepel ggsci ggsignif ggtext gld glmnet glue googledrive googlesheets4 gridExtra gridtext gtable HardyWeinberg haven highr hms htmltools htmlwidgets httpcode httpuv httr ids inum IRanges isoband iterators jomo jpeg jquerylib jsonlite kableExtra KEGGREST km.ci KMsurv knitr labeling lambda.r later lattice lazyeval libcoin lifecycle lme4 lmom lubridate maftools magrittr markdown MASS Matrix MatrixGenerics MatrixModels matrixStats maxstat memoise mgcv mice microbenchmark mime miniUI minqa mitml modelr MultiAssayExperiment munsell mvtnorm nanotime nlme nloptr nnet numDeriv officer openssl operator.tools ordinal pan partykit pbkrtest pillar pkgconfig plogr plyr png polynom prettyunits processx progress promises proxy ps purrr quantreg R.cache R.methodsS3 R.oo R.utils R6 ragg RaggedExperiment rapiclient rappdirs RColorBrewer Rcpp RcppCCTZ RcppDate RcppEigen RCurl readr readxl rematch rematch2 reprex reshape2 restfulr Rhtslib rjson RJSONIO rlang rmarkdown rootSolve rpart rprojroot Rsamtools Rsolnp RSQLite rstatix rstudioapi RTCGAToolbox rtracklayer rvest S4Arrays S4Vectors sass scales selectr shape shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinylogs shinymeta shinyWidgets snow sourcetools SparseArray SparseM stringi stringr styler SummarizedExperiment survival survminer survMisc svglite sys systemfonts TCGAutils textshaping tibble tidyr tidyselect tidyverse timechange tinytex triebeard truncnorm tzdb ucminf UCSC.utils urltools utf8 uuid vctrs viridisLite vroom waiter withr writexl xfun XML xml2 xtable XVector yaml zip zlibbioc zoo

GNOSIS: Genomics explorer using statistical and survival analysis in R

Lydia King

Rendered fromGNOSIS.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2023-10-14
Started: 2023-09-04

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Help Manual

Help page	Topics
#' Initialise GNOSIS	GNOSIS

Package: GNOSIS 1.3.0

GNOSIS: Genomics explorer using statistical and survival analysis in R

GNOSIS: Genomics explorer using statistical and survival analysis in R

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)