Package: GNOSIS 1.5.0

Lydia King

GNOSIS: Genomics explorer using statistical and survival analysis in R

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Authors:Lydia King [aut, cre], Marcel Ramos [ctb]

GNOSIS_1.5.0.tar.gz
GNOSIS_1.5.0.zip(r-4.5)GNOSIS_1.5.0.zip(r-4.4)GNOSIS_1.5.0.zip(r-4.3)
GNOSIS_1.5.0.tgz(r-4.4-any)GNOSIS_1.5.0.tgz(r-4.3-any)
GNOSIS_1.5.0.tar.gz(r-4.5-noble)GNOSIS_1.5.0.tar.gz(r-4.4-noble)
GNOSIS_1.5.0.tgz(r-4.4-emscripten)GNOSIS_1.5.0.tgz(r-4.3-emscripten)
GNOSIS.pdf |GNOSIS.html✨
GNOSIS/json (API)
NEWS

# Install 'GNOSIS' in R:
install.packages('GNOSIS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lydia-king/gnosis/issues

On BioConductor:GNOSIS-1.5.0(bioc 3.21)GNOSIS-1.4.0(bioc 3.20)

softwareshinyappssurvivalgui

4.70 score 5 stars 2 scripts 148 downloads 1 exports 289 dependencies

Last updated 3 months agofrom:45d78206cb. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 17 2025
R-4.5-winWARNINGJan 17 2025
R-4.5-linuxWARNINGJan 17 2025
R-4.4-winWARNINGJan 17 2025
R-4.4-macWARNINGJan 17 2025
R-4.3-winWARNINGJan 17 2025
R-4.3-macWARNINGJan 17 2025

Exports:GNOSIS

Dependencies:abindAnnotationDbiAnVILAnVILBaseanytimeaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootbroombslibBWStestcachemcallrcarcarDatacBioPortalDatacellrangerchronclassclicliprcodetoolscolorspacecommonmarkcompareGroupsconflictedcorrplotcowplotcpp11crayoncrosstalkcurldashboardthemesdata.tableDBIdbplyrDelayedArrayDerivDescToolsdigestDNAcopydoBydplyrDTdtplyre1071evaluateExactexactRankTestsexpmfabricatrfansifarverfastmapfilelockflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachformatRFormulafreshfsfutile.loggerfutile.optionsgarglegdtoolsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicDataCommonsGenomicFeaturesGenomicRangesggplot2ggpubrggrepelggsciggsignifggtextgldglmnetgluegmpgoogledrivegooglesheets4gridExtragridtextgtableHardyWeinberghavenhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2idsinumIRangesisobanditeratorsjomojpegjquerylibjsonlitekableExtraKEGGRESTkm.ciKMsurvknitrkSampleslabelinglambda.rlaterlatticelazyevallibcoinlifecyclelme4lmomlubridatemaftoolsmagrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmaxstatmemoisemgcvmicemicrobenchmarkmimeminiUIminqamitmlmodelrmultcompViewMultiAssayExperimentmunsellmvtnormnanotimenlmenloptrnnetnumDerivofficeropenssloperator.toolsordinalpanpartykitpbkrtestpheatmappillarpkgconfigplogrplyrPMCMRpluspngpolynomprettyunitsprocessxprogresspromisesproxypspurrrquantregR.cacheR.methodsS3R.ooR.utilsR6raggRaggedExperimentrapiclientrappdirsrbibutilsRColorBrewerRcppRcppCCTZRcppDateRcppEigenRCurlRdpackreadrreadxlreformulasrematchrematch2reprexreshape2restfulrRhtslibrjsonRJSONIOrlangrmarkdownRmpfrrootSolverpartrprojrootRsamtoolsRsolnpRSQLiterstatixrstudioapiRTCGAToolboxrtracklayerrvestS4ArraysS4VectorssassscalesselectrshapeshinyshinycssloadersshinydashboardshinydashboardPlusshinyjsshinylogsshinymetashinyWidgetssnowsourcetoolsSparseArraySparseMstringistringrstylerSummarizedExperimentSuppDistssurvivalsurvminersurvMiscsvglitesyssystemfontsTCGAutilstextshapingtibbletidyrtidyselecttidyversetimechangetinytextruncnormtzdbucminfUCSC.utilsutf8uuidvctrsviridisLitevroomwaiterwithrwritexlxfunXMLxml2xtableXVectoryamlzipzlibbioczoo

GNOSIS: Genomics explorer using statistical and survival analysis in R

Lydia King

Rendered fromGNOSIS.Rmdusingknitr::rmarkdownon Jan 17 2025.

Last update: 2023-10-14
Started: 2023-09-04