Package: GNOSIS 1.11.0

Lydia King

GNOSIS: Genomics explorer using statistical and survival analysis in R

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Authors:Lydia King [aut, cre], Marcel Ramos [ctb]

GNOSIS_1.11.0.tar.gz
GNOSIS_1.11.0.zip(r-4.7)GNOSIS_1.11.0.zip(r-4.6)GNOSIS_1.11.0.zip(r-4.5)
GNOSIS_1.11.0.tgz(r-4.6-any)GNOSIS_1.11.0.tgz(r-4.5-any)
GNOSIS_1.11.0.tar.gz(r-4.7-any)GNOSIS_1.11.0.tar.gz(r-4.6-any)
GNOSIS_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GNOSIS/json (API)
NEWS

# Install 'GNOSIS' in R:
install.packages('GNOSIS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lydia-king/gnosis/issues

On BioConductor:GNOSIS-1.11.0(bioc 3.24)GNOSIS-1.10.0(bioc 3.23)

softwareshinyappssurvivalgui

4.85 score 7 stars 2 scripts 268 downloads 1 exports 301 dependencies

Last updated from:2f94c0859b. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE279
linux-devel-x86_64WARNING573
source / vignettesOK427
linux-release-x86_64WARNING523
macos-release-arm64WARNING338
macos-oldrel-arm64WARNING352
windows-develWARNING430
windows-releaseWARNING458
windows-oldrelWARNING468
wasm-releaseOK236

Exports:GNOSIS

Dependencies:abindAnnotationDbiAnVILAnVILBaseanytimeaskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbookdownbootbroombslibBWStestcachemcallrcarcarDatacBioPortalDatacellrangerchroncigarilloclassclicliprcodetoolscolorspacecommonmarkcompareGroupsconflictedcorrplotcowplotcpp11crayoncrosstalkcurldashboardthemesdata.tableDBIdbplyrDelayedArrayDerivDescToolsdigestDNAcopydoBydplyrDTdtplyre1071evaluateExactexactRankTestsexpmfabricatrfarverfastmapfilelockflextablefontawesomefontBitstreamVerafontLiberationfontquiverforcatsforeachforecastformatRFormulafracdifffreshfsfutile.loggerfutile.optionsfuturefuture.applygargleGCPtoolsgdtoolsgenericsGenomeInfoDbGenomicAlignmentsGenomicDataCommonsGenomicFeaturesGenomicRangesggplot2ggpubrggrepelggsciggsignifggtextgldglmnetglobalsgluegmpgoogledrivegooglesheets4gridExtragridtextgtableHardyWeinberghavenhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2idsinumIRangesisobanditeratorsjomojpegjquerylibjsonlitekableExtraKEGGRESTkeyringknitrkSampleslabelinglambda.rlaterlatticelazyevallibcoinlifecyclelistenvlitedownlme4lmomlmtestlubridatemaftoolsmagrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmaxstatmemoisemgcvmicemicrobenchmarkmimeminiUIminqamitmlmodelrmultcompViewMultiAssayExperimentmvtnormnanotimenlmenloptrnnetnumDerivofficeropenssloperator.toolsordinalotelpanparallellypartykitpbkrtestpheatmappillarpkgconfigplyrPMCMRpluspngpolynomprettyunitsprocessxprogresspromisesproxypspurrrquantregR.cacheR.methodsS3R.ooR.utilsR6raggRaggedExperimentrapiclientrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppCCTZRcppDateRcppEigenRCurlRdpackreadrreadxlreformulasrematchrematch2reprexreshape2restfulrRhtslibrjsonRJSONIOrlangrmarkdownrmdformatsRmpfrrootSolverpartrprojrootRsamtoolsRsolnpRSQLiterstatixrstudioapiRTCGAToolboxrtracklayerrvestS4ArraysS4VectorsS7sassscalesselectrSeqinfoshapeshinyshinycssloadersshinydashboardshinydashboardPlusshinyjsshinylogsshinymetashinyWidgetssnowsourcetoolsSparseArraySparseMstringistringrstylerSummarizedExperimentSuppDistssurvivalsurvminersvglitesyssystemfontsTCGAutilstextshapingtibbletidyrtidyselecttidyversetimechangetimeDatetinytextruncnormtzdbucminfUCSC.utilsurcautf8uuidvctrsviridisLitevroomwaiterwithrwritexlxfunXMLxml2xtableXVectoryamlzipzoo

GNOSIS: Genomics explorer using statistical and survival analysis in R

Lydia King

Rendered fromGNOSIS.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-10-14
Started: 2023-09-04