Package 'GNOSIS'

Title: Genomics explorer using statistical and survival analysis in R
Description: GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.
Authors: Lydia King [aut, cre] , Marcel Ramos [ctb]
Maintainer: Lydia King <[email protected]>
License: MIT + file LICENSE
Version: 1.3.0
Built: 2024-06-30 06:00:52 UTC
Source: https://github.com/bioc/GNOSIS

Help Index

#' Initialise GNOSIS

Description

The shiny app will allow the user to explore and analyse clinical and copy number data uploaded manually or selected from a dataframe containing datasets available through cBioPortal.

Usage

GNOSIS(...)

Arguments

...

Further arguments to the runApp function

Details

Note. This shiny app is an updated version of the app published in HRB Open Research. For details on version updates see NEWS.

Value

Mainly called for the side effect of displaying the shiny app in a browser

Examples

if (interactive()) {
    GNOSIS()
}