Summary | Introduction | Principle | Example usage | Session Information
Package: GEOsubmission 1.65.0
Alexandre Kuhn
GEOsubmission: Prepares microarray data for submission to GEO
Helps to easily submit a microarray dataset and the associated sample information to GEO by preparing a single file for upload (direct deposit).
Authors:
GEOsubmission_1.65.0.tar.gz
GEOsubmission_1.65.0.zip(r-4.7)GEOsubmission_1.65.0.zip(r-4.6)GEOsubmission_1.65.0.zip(r-4.5)
GEOsubmission_1.65.0.tgz(r-4.6-any)GEOsubmission_1.65.0.tgz(r-4.5-any)
GEOsubmission_1.65.0.tar.gz(r-4.7-any)GEOsubmission_1.65.0.tar.gz(r-4.6-any)
GEOsubmission_1.65.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GEOsubmission/json (API)
| # Install 'GEOsubmission' in R: |
| install.packages('GEOsubmission', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GEOsubmission-1.65.0(bioc 3.24)GEOsubmission-1.64.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8a1dd4b219. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 140 | ||
| linux-devel-x86_64 | OK | 192 | ||
| source / vignettes | OK | 141 | ||
| linux-release-x86_64 | OK | 187 | ||
| macos-release-arm64 | OK | 95 | ||
| macos-oldrel-arm64 | OK | 73 | ||
| windows-devel | OK | 64 | ||
| windows-release | OK | 101 | ||
| windows-oldrel | OK | 66 | ||
| wasm-release | OK | 95 |
Exports:microarray2soft
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagergenericspreprocessCore
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| expressionNormalized.txt | expressionNormalized |
| Prepares microarray data for submission to GEO | microarray2soft |
| sample1.CEL | sample1 |
| sample2.CEL | sample2 |
| sampleInfo.txt | sampleInfo |
| seriesInfo.txt | seriesInfo |
