Package: ExpressionAtlas 2.5.0

Anil Thanki

ExpressionAtlas: Download datasets from EMBL-EBI Expression Atlas

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

Authors:Maria Keays [aut], Pedro Madrigal [aut], Anil Thanki [cre]

ExpressionAtlas_2.5.0.tar.gz
ExpressionAtlas_2.5.0.zip(r-4.7)ExpressionAtlas_2.5.0.zip(r-4.6)ExpressionAtlas_2.5.0.zip(r-4.5)
ExpressionAtlas_2.5.0.tgz(r-4.6-any)ExpressionAtlas_2.5.0.tgz(r-4.5-any)
ExpressionAtlas_2.5.0.tar.gz(r-4.7-any)ExpressionAtlas_2.5.0.tar.gz(r-4.6-any)
ExpressionAtlas_2.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ExpressionAtlas/json (API)
NEWS

# Install 'ExpressionAtlas' in R:
install.packages('ExpressionAtlas', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • allExps - A SimpleList containing some dummy Expression Atlas datasets
  • atlasRes - A DataFrame listing some Expression Atlas experiments
  • rnaseqExps - A SimpleList containing a dummy RNA-seq Expression Atlas dataset

On BioConductor:ExpressionAtlas-2.5.0(bioc 3.24)ExpressionAtlas-2.4.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

expressiondataexperimentdatasequencingdatamicroarraydataarrayexpress

4.94 score 31 scripts 414 downloads 7 mentions 3 exports 56 dependencies

Last updated from:5efeaff3e3. Checks:1 ERROR, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR179
linux-devel-x86_64OK284
source / vignettesOK208
linux-release-x86_64OK333
macos-release-arm64OK185
macos-oldrel-arm64OK225
windows-develOK235
windows-releaseOK223
windows-oldrelOK266
wasm-releaseOK122

Exports:getAtlasDatagetAtlasExperimentsearchAtlasExperiments

Dependencies:abindaskpassbase64encBiobaseBiocGenericsBiocManagerBiocStylebitopsbookdownbslibcachemclicurlDelayedArraydigestevaluatefastmapfontawesomefsgenericsGenomicRangeshighrhtmltoolshttrIRangesjquerylibjsonliteknitrlatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsmemoisemimeopensslR6rappdirsRCurlrlangrmarkdownS4ArraysS4VectorssassSeqinfoSparseArraystatmodSummarizedExperimentsystinytexxfunXMLxml2XVectoryaml

ExpressionAtlas package vignette

Maria Keays

Rendered fromExpressionAtlas.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-10-21
Started: 2016-02-22