Package: ExpressionAtlas
Version: 2.5.0
Date: 2025/09/01
Title: Download datasets from EMBL-EBI Expression Atlas
Authors@R: 
    c(person(given = "Maria",
           family = "Keays",
           role = c("aut"),
           comment = c(ORCID = "0000-0003-2034-601X")
      ),
        person(given = "Pedro",
           family = "Madrigal",
           role = c("aut"),
           email = "pmadrigal@ebi.ac.uk",
           comment = c(ORCID = "0000-0003-1959-8199")
      ),
        person(given = "Anil",
           family = "Thanki",
           role = c("cre"),
           email = "anilthanki@ebi.ac.uk",
           comment = c(ORCID = "0000-0002-8941-444X")
      )
    )
Description: This package is for searching for datasets in EMBL-EBI
        Expression Atlas, and downloading them into R for further
        analysis. Each Expression Atlas dataset is represented as a
        SimpleList object with one element per platform. Sequencing
        data is contained in a SummarizedExperiment object, while
        microarray data is contained in an ExpressionSet or MAList
        object.
biocViews: ExpressionData, ExperimentData, SequencingData,
        MicroarrayData, ArrayExpress
Depends: R (>= 4.2.0), methods, Biobase, SummarizedExperiment, limma,
        S4Vectors, xml2, RCurl, jsonlite, BiocStyle
Imports: utils, XML, httr
Suggests: knitr, testthat, rmarkdown
VignetteBuilder: knitr
Collate: functions.R
License: GPL (>= 3)
LazyLoad: yes
NeedsCompilation: no
Config/pak/sysreqs: cmake make libuv1-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:42:41 UTC
RemoteUrl: https://github.com/bioc/ExpressionAtlas
RemoteRef: HEAD
RemoteSha: 5efeaff3e37ac08e42fb718902bea2c6d4784998
Packaged: 2026-07-04 00:46:40 UTC; root
Author: Maria Keays [aut] (ORCID: <https://orcid.org/0000-0003-2034-601X>),
  Pedro Madrigal [aut] (ORCID: <https://orcid.org/0000-0003-1959-8199>),
  Anil Thanki [cre] (ORCID: <https://orcid.org/0000-0002-8941-444X>)
Maintainer: Anil Thanki <anilthanki@ebi.ac.uk>