Package: ExperimentHubData 1.33.0

Bioconductor Package Maintainer

ExperimentHubData: Add resources to ExperimentHub

Functions to add metadata to ExperimentHub db and resource files to AWS S3 buckets.

Authors:Bioconductor Maintainer [cre]

ExperimentHubData_1.33.0.tar.gz
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ExperimentHubData_1.33.0.tgz(r-4.4-any)ExperimentHubData_1.33.0.tgz(r-4.3-any)
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ExperimentHubData.pdf |ExperimentHubData.html✨
ExperimentHubData/json (API)
NEWS

# Install 'ExperimentHubData' in R:

install.packages('ExperimentHubData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:ExperimentHubData-1.31.0(bioc 3.20)ExperimentHubData-1.30.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

infrastructure dataimport gui thirdpartyclient

3.78 score 1 packages 6 scripts 622 downloads 3 exports 116 dependencies

Last updated 22 days agofrom:c820abe392. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	WARNING	Oct 30 2024
R-4.5-linux	WARNING	Oct 30 2024
R-4.4-win	WARNING	Oct 30 2024
R-4.4-mac	WARNING	Oct 31 2024
R-4.3-win	WARNING	Oct 30 2024
R-4.3-mac	WARNING	Oct 31 2024

Exports:addResources ExperimentHubMetadata makeExperimentHubMetadata

Dependencies:abind AnnotationDbi AnnotationForge AnnotationHub AnnotationHubData askpass BH Biobase BiocBaseUtils BiocCheck BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion biocViews biomaRt Biostrings bit bit64 bitops blob cachem callr cli codetools cpp11 crayon curl DBI dbplyr DelayedArray digest dplyr evaluate ExperimentHub fansi fastmap filelock formatR futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges glue graph highr hms httr httr2 IRanges jsonlite KEGGREST knitr lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl OrganismDbi pillar pkgconfig plogr png prettyunits processx progress ps purrr R6 rappdirs RBGL RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer RUnit rvest S4Arrays S4Vectors selectr snow SparseArray stringdist stringi stringr SummarizedExperiment sys tibble tidyr tidyselect txdbmaker UCSC.utils utf8 vctrs withr xfun XML xml2 XVector yaml zlibbioc

Introduction to ExperimentHubData

Valerie Obenchain

Rendered fromExperimentHubData.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2021-07-06
Started: 2016-02-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
addResources	addResources
Class ExperimentHubMetadata objects and methods	class:ExperimentHubMetadata ExperimentHubMetadata ExperimentHubMetadata-class show,ExperimentHubMetadata-method
Make ExperimentHubMetadata objects from csv file of metadata	makeExperimentHubMetadata

Usage by other packages (reverse dependencies)