Package: EpipwR 1.1.0

Jackson Barth

EpipwR: Efficient Power Analysis for EWAS with Continuous or Binary Outcomes

A quasi-simulation based approach to performing power analysis for EWAS (Epigenome-wide association studies) with continuous or binary outcomes. 'EpipwR' relies on empirical EWAS datasets to determine power at specific sample sizes while keeping computational cost low. EpipwR can be run with a variety of standard statistical tests, controlling for either a false discovery rate or a family-wise type I error rate.

Authors:Jackson Barth [aut, cre], Austin Reynolds [aut], Mary Lauren Benton [ctb], Carissa Fong [ctb]

EpipwR_1.1.0.tar.gz
EpipwR_1.1.0.zip(r-4.5)EpipwR_1.1.0.zip(r-4.4)
EpipwR_1.1.0.tgz(r-4.4-any)
EpipwR_1.1.0.tar.gz(r-4.5-noble)EpipwR_1.1.0.tar.gz(r-4.4-noble)
EpipwR_1.1.0.tgz(r-4.4-emscripten)
EpipwR.pdf |EpipwR.html
EpipwR/json (API)
NEWS

# Install 'EpipwR' in R:
install.packages('EpipwR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jbarth216/epipwr/issues

On BioConductor:EpipwR-0.99.3(bioc 3.20)

epigeneticsexperimentaldesign

4.40 score 3 scripts 3 exports 76 dependencies

Last updated 2 days agofrom:d393930e98. Checks:OK: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 31 2024

Exports:EpipwR_plotget_power_ccget_power_cont

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicolorspacecpp11crayoncurlDBIdbplyrdplyrEpipwR.dataExperimentHubfansifarverfastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpurrrR6rappdirsRColorBrewerrlangRSQLiteS4VectorsscalesstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectoryamlzlibbioc

EpipwR

Rendered fromEpipwR.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-10-07
Started: 2024-05-22