Package: EpipwR 1.1.0

Jackson Barth

EpipwR: Efficient Power Analysis for EWAS with Continuous or Binary Outcomes

A quasi-simulation based approach to performing power analysis for EWAS (Epigenome-wide association studies) with continuous or binary outcomes. 'EpipwR' relies on empirical EWAS datasets to determine power at specific sample sizes while keeping computational cost low. EpipwR can be run with a variety of standard statistical tests, controlling for either a false discovery rate or a family-wise type I error rate.

Authors:Jackson Barth [aut, cre], Austin Reynolds [aut], Mary Lauren Benton [ctb], Carissa Fong [ctb]

EpipwR_1.1.0.tar.gz
EpipwR_1.1.0.zip(r-4.5)EpipwR_1.1.0.zip(r-4.4)
EpipwR_1.1.0.tgz(r-4.5-any)EpipwR_1.1.0.tgz(r-4.4-any)
EpipwR_1.1.0.tar.gz(r-4.5-noble)EpipwR_1.1.0.tar.gz(r-4.4-noble)
EpipwR_1.1.0.tgz(r-4.4-emscripten)
EpipwR.pdf |EpipwR.html
EpipwR/json (API)
NEWS

# Install 'EpipwR' in R:
install.packages('EpipwR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jbarth216/epipwr/issues

On BioConductor:EpipwR-1.1.0(bioc 3.21)EpipwR-1.0.0(bioc 3.20)

epigeneticsexperimentaldesign

4.40 score 3 scripts 118 downloads 3 exports 75 dependencies

Last updated 5 months agofrom:d393930e98. Checks:4 OK, 3 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winERRORMar 29 2025
R-4.5-macOKMar 29 2025
R-4.5-linuxERRORMar 29 2025
R-4.4-winERRORMar 29 2025
R-4.4-macOKMar 29 2025
R-4.4-linuxOKMar 29 2025

Exports:EpipwR_plotget_power_ccget_power_cont

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicolorspacecpp11crayoncurlDBIdbplyrdplyrEpipwR.dataExperimentHubfansifarverfastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandjsonliteKEGGRESTlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpurrrR6rappdirsRColorBrewerrlangRSQLiteS4VectorsscalesstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectoryaml

EpipwR

Rendered fromEpipwR.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2024-10-07
Started: 2024-05-22