{
  "_id": "6a1ad2451d7bb097a09e2e12",
  "Package": "EpipwR",
  "Type": "Package",
  "Title": "Efficient Power Analysis for EWAS with Continuous or Binary\nOutcomes",
  "Version": "1.7.0",
  "Authors@R": "c(person(given=\"Jackson\", family=\"Barth\", role=c(\"aut\",\"cre\"),\nemail=\"Jackson_Barth@Baylor.edu\",\ncomment=c(ORCID = \"0009-0009-6307-9928\")),\nperson(\"Austin\", \"Reynolds\", role=\"aut\"),\nperson(\"Mary Lauren\", \"Benton\", role=\"ctb\"),\nperson(\"Carissa\",\"Fong\",role=\"ctb\"))",
  "Description": "A quasi-simulation based approach to performing power\nanalysis for EWAS (Epigenome-wide association studies) with\ncontinuous or binary outcomes. 'EpipwR' relies on empirical\nEWAS datasets to determine power at specific sample sizes while\nkeeping computational cost low. EpipwR can be run with a\nvariety of standard statistical tests, controlling for either a\nfalse discovery rate or a family-wise type I error rate.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "URL": "https://github.com/jbarth216/EpipwR",
  "BugReports": "https://github.com/jbarth216/EpipwR",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.1",
  "VignetteBuilder": "knitr",
  "biocViews": "Epigenetics, ExperimentalDesign",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:47 UTC",
  "RemoteUrl": "https://github.com/bioc/EpipwR",
  "RemoteRef": "HEAD",
  "RemoteSha": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 08:31:49 UTC",
    "User": "root"
  },
  "Author": "Jackson Barth [aut, cre] (ORCID:\n<https://orcid.org/0009-0009-6307-9928>),\nAustin Reynolds [aut],\nMary Lauren Benton [ctb],\nCarissa Fong [ctb]",
  "Maintainer": "Jackson Barth <Jackson_Barth@Baylor.edu>",
  "MD5sum": "cf5c9dd7d757ef4dc4abf95c32c3add9",
  "_user": "bioc",
  "_type": "src",
  "_file": "EpipwR_1.7.0.tar.gz",
  "_fileid": "990da9233606fccf9618cb59efbe5e26d4942bbd8139e6c2735508337ab2494a",
  "_filesize": 229564,
  "_sha256": "990da9233606fccf9618cb59efbe5e26d4942bbd8139e6c2735508337ab2494a",
  "_created": "2026-05-30T08:31:49.000Z",
  "_published": "2026-05-30T12:04:21.832Z",
  "_jobs": [
    {
      "job": 78636782322,
      "time": 157,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7306864655"
    },
    {
      "job": 78636782340,
      "time": 285,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7306876617"
    },
    {
      "job": 78636782339,
      "time": 287,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306876769"
    },
    {
      "job": 78636782323,
      "time": 196,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7308035367"
    },
    {
      "job": 78636782317,
      "time": 154,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7308031396"
    },
    {
      "job": 78636581366,
      "time": 233,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306848950"
    },
    {
      "job": 78636782306,
      "time": 122,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306861229"
    },
    {
      "job": 78636782350,
      "time": 199,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7306868732"
    },
    {
      "job": 78636782358,
      "time": 206,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7306869369"
    },
    {
      "job": 78636782357,
      "time": 199,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7306868784"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 7
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/EpipwR",
  "_commit": {
    "id": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381427
  },
  "_maintainer": {
    "name": "Jackson Barth",
    "email": "jackson_barth@baylor.edu"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "EpipwR.data",
      "role": "Imports"
    },
    {
      "package": "ExperimentHub",
      "version": ">= 2.10.0",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "sessioninfo",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-36",
      "n": 2
    },
    {
      "week": "2025-43",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "epigenetics",
    "experimentaldesign"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "jbarth216",
      "count": 25,
      "uuid": 130699594
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 237,
    "source": "https://www.bioconductor.org/packages/stats/bioc/EpipwR"
  },
  "_devurl": "https://github.com/jbarth216/epipwr",
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/EpipwR.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jbarth216/epipwr",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "EpipwR_plot",
    "get_power_cc",
    "get_power_cont",
    "pwrE_to_EpipwR"
  ],
  "_help": [
    {
      "page": "EpipwR_plot",
      "title": "Plotting EpipwR Output",
      "topics": [
        "EpipwR_plot"
      ]
    },
    {
      "page": "get_power_cc",
      "title": "Power Calculations for Case/Control EWAS",
      "topics": [
        "get_power_cc"
      ]
    },
    {
      "page": "get_power_cont",
      "title": "Power Calculations for Continuous EWAS",
      "topics": [
        "get_power_cont"
      ]
    },
    {
      "page": "pwrE_to_EpipwR",
      "title": "Using pwrEWAS effect-size distributions in EpipwR",
      "topics": [
        "pwrE_to_EpipwR"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/EpipwR/raw/HEAD/README.md",
  "_rundeps": [
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "dplyr",
    "EpipwR.data",
    "ExperimentHub",
    "farver",
    "fastmap",
    "filelock",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "httr",
    "httr2",
    "IRanges",
    "isoband",
    "jsonlite",
    "KEGGREST",
    "labeling",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "EpipwR.Rmd",
      "filename": "EpipwR.html",
      "title": "EpipwR",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Methodology (Continuous Outcome)",
        "Function Inputs",
        "Methodology (Binary outcome)",
        "EpipwR Workflow",
        "References"
      ],
      "created": "2024-05-22 17:29:01",
      "modified": "2024-10-07 17:43:12",
      "commits": 3
    }
  ],
  "_score": 4.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "epipwr",
  "_universes": [
    "bioc",
    "jbarth216"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-05-30T08:35:14.000Z",
      "distro": "noble",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "8c20fbb8dd36050f739ac24ad154daa44f1b45c89d0f0852f2a7b6c2c06b07f4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-05-30T08:35:17.000Z",
      "distro": "noble",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "91f856263f0d1946c9884f568cda8695d4700df043499fdee5990f9ad6e8242d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-05-30T12:02:35.000Z",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "b9d954b5d88e19ea0987bb840b99bf2f238fbdcbdc026cf8b55296cb40e8cfb4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-05-30T12:01:58.000Z",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "06bc8efe98fbbc895b2928fefc59c467d7f4c9d6d7e4daba0825fe689a2cc32e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.0",
      "date": "2026-05-30T08:34:18.000Z",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "f4eb7198dc26f1dba86a22e965519aec0133b912e2f597feebadb10ed693d851",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-05-30T08:33:23.000Z",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "26eef7a5479560b6c861af7906453c28b2b57a35772c23688c11b41e6d8af1aa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-05-30T08:33:41.000Z",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "3a643924225811fb6a67ada67e9e5521db378c7350ea29cbaf248d027de5db3b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-05-30T08:33:20.000Z",
      "commit": "9d8d4c28f74250813dd5ee5a44c4a02e2e7d3084",
      "fileid": "b6f8140c8cec97182917fbca8305c6f6691409ce8228c1f87681b300b906725e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679237814"
    }
  ]
}