Package: DaparToolshedData 0.99.21

Samuel Wieczorek

DaparToolshedData: Data accompanying the DaparToolshed and Prostar 2 packages

Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.

Authors:Samuel Wieczorek [aut, cre], Enora Fremy [aut]

DaparToolshedData_0.99.21.tar.gz
DaparToolshedData_0.99.21.tar.gz(r-4.7-any)DaparToolshedData_0.99.21.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DaparToolshedData/json (API)

# Install 'DaparToolshedData' in R:

install.packages('DaparToolshedData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/edyp-lab/dapartoolsheddata/issues

Pkgdown/docs site:https://edyp-lab.github.io

On BioConductor:DaparToolshedData-0.99.21(data/experiment 3.24)

experimentdata experimenthub massspectrometrydata prostar2 datapkg

4.40 score 2 scripts 12 exports 110 dependencies

Last updated from:c57c84c02c. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	166
linux-devel	NOTE	415
source / vignettes	OK	260
linux-release	NOTE	503

Exports:DaparToolshedData Exp1_R2_pept Exp1_R2_prot Exp1_R25_pept Exp1_R25_prot Exp2_R10_pept Exp2_R10_prot Exp2_R100_pept Exp2_R100_prot Exp2_R2_pept Exp2_R2_prot GetData

Dependencies:abind AnnotationDbi AnnotationFilter AnnotationHub askpass base64enc Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob bslib cachem cli clue cluster cpp11 crayon crosstalk curl data.table DBI dbplyr DelayedArray digest dplyr evaluate ExperimentHub farver fastmap filelock fontawesome fs generics GenomicRanges ggplot2 glue gtable highr htmltools htmlwidgets httr httr2 igraph IRanges isoband jquerylib jsonlite KEGGREST knitr labeling later lattice lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise mime MsCoreUtils MultiAssayExperiment openssl otel pillar pkgconfig plotly plyr png promises ProtGenerics purrr QFeatures R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown RSQLite S4Arrays S4Vectors S7 sass scales Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun XVector yaml

DaparToolshed data using Bioconductor's ExperimentHub

Introduction | Installation | Available data | sessionInfo()

Rendered fromDaparToolshedData.Rmdusingknitr::rmarkdown

Last update: 2026-07-17
Started: 2024-10-11

Help page	Topics
Functions to get datasets	access-functions GetData
All DaparToolshedData datasets	DaparToolshedData
Exp1_R2_pept dataset	Exp1_R2_pept
Exp1_R2_prot dataset	Exp1_R2_prot
Exp1_R25_pept dataset	Exp1_R25_pept
Exp1_R25_prot dataset	Exp1_R25_prot
Exp2_R10_pept dataset	Exp2_R10_pept
Exp2_R10_prot dataset	Exp2_R10_prot
Exp2_R100_pept dataset	Exp2_R100_pept
Exp2_R100_prot dataset	Exp2_R100_prot
Exp2_R2_pept dataset	Exp2_R2_pept
Exp2_R2_prot dataset	Exp2_R2_prot

Package: DaparToolshedData 0.99.21

DaparToolshedData: Data accompanying the DaparToolshed and Prostar 2 packages

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Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)