Package: DNAcycP2 0.99.7

Ji-Ping Wang

DNAcycP2: DNA Cyclizability Prediction

This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.

Authors:Ji-Ping Wang [aut, cre]

DNAcycP2_0.99.7.tar.gz
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DNAcycP2.pdf |DNAcycP2.html✨
DNAcycP2/json (API)
NEWS

# Install 'DNAcycP2' in R:
install.packages('DNAcycP2', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jipingw/dnacycp2/issues

On BioConductor:DNAcycP2-0.99.5(bioc 3.21)

neuralnetworkstructuralprediction

4.54 score 39 downloads 2 exports 16 dependencies

Last updated 2 days agofrom:5c1bc33aa3. Checks:7 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-winOKMar 26 2025
R-4.5-macOKMar 26 2025
R-4.5-linuxOKMar 26 2025
R-4.4-winOKMar 26 2025
R-4.4-macOKMar 26 2025
R-4.4-linuxOKMar 26 2025

Exports:cyclecycle_fasta

Dependencies:basiliskbasilisk.utilsdir.expiryfilelockherejsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr

DNAcycP2: DNA Cyclizability Prediction v2

Brody Kendall, Ji-Ping Wang, and Keren Li

Rendered fromdnacycp2.Rmdusingknitr::rmarkdownon Mar 26 2025.

Last update: 2025-03-12
Started: 2025-01-23