Package: DNAcycP2
Title: DNA Cyclizability Prediction
Version: 1.5.1
Authors@R: c(
    person("Brody", "Kendall",
           email = "curtiskendall2025@u.northwestern.edu",
           role = "aut"),
    person("Keren", "Li",
           email = "kli@uab.edu",
           role = "aut"),
    person("Ji-Ping", "Wang",
           email = "jzwang@northwestern.edu",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8398-939X")))
Description: This package performs prediction of intrinsic
        cyclizability of of every 50-bp subsequence in a DNA sequence.
        The input could be a file either in FASTA or text format. The
        output will be the C-score, the estimated intrinsic
        cyclizability score for each 50 bp sequences in each entry of
        the sequence set.
Depends: R (>= 4.4.0)
Imports: basilisk, reticulate
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
StagedInstall: yes
biocViews: NeuralNetwork, StructuralPrediction
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle,
        Biostrings
URL: https://github.com/jipingw/DNAcycP2
BugReports: https://github.com/jipingw/DNAcycP2
Config/pak/sysreqs: libpng-dev python3
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-02 23:13:24 UTC
RemoteUrl: https://github.com/bioc/DNAcycP2
RemoteRef: HEAD
RemoteSha: 16bab4bfe395a365c81a2f62d907fecd2ec180f7
NeedsCompilation: no
Packaged: 2026-07-02 06:15:07 UTC; root
Author: Brody Kendall [aut],
  Keren Li [aut],
  Ji-Ping Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8398-939X>)
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>