Package: CardinalIO 1.5.0

Kylie Ariel Bemis

CardinalIO: Read and write mass spectrometry imaging files

Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.

Authors:Kylie Ariel Bemis [aut, cre]

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CardinalIO.pdf |CardinalIO.html✨
CardinalIO/json (API)
NEWS

# Install 'CardinalIO' in R:
install.packages('CardinalIO', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kuwisdelu/cardinalio/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:CardinalIO-1.5.0(bioc 3.21)CardinalIO-1.4.0(bioc 3.20)

softwareinfrastructuredataimportmassspectrometryimagingmassspectrometrycpp

5.41 score 1 stars 1 packages 3 scripts 286 downloads 12 exports 19 dependencies

Last updated 4 months agofrom:60442d0d0d. Checks:4 OK, 4 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 28 2025
R-4.5-win-x86_64NOTEJan 28 2025
R-4.5-mac-x86_64NOTEJan 28 2025
R-4.5-mac-aarch64NOTEJan 28 2025
R-4.5-linux-x86_64NOTEJan 28 2025
R-4.4-win-x86_64OKJan 28 2025
R-4.4-mac-x86_64OKJan 28 2025
R-4.4-mac-aarch64OKJan 28 2025

Exports:exampleImzMLFilefind_descendants_infind_termfind_termsget_oboImzMetametadataparseAnalyzeparseImzMLvalid_termswriteAnalyzewriteImzML

Dependencies:BHBiocGenericsBiocParallelcodetoolscpp11digestformatRfutile.loggerfutile.optionsgenericsirlbalambda.rlatticeMatrixmatterontologyIndexProtGenericsS4Vectorssnow

CardinalIO: Parsing and writing imzML files

Kylie Ariel Bemis

Rendered fromCardinalIO-guide.Rmdusingknitr::rmarkdownon Jan 28 2025.

Last update: 2023-08-12
Started: 2023-08-05

Readme and manuals

Help Manual

Help pageTopics
CardinalIO packageCardinalIO-package CardinalIO
Example imzML filesexampleImzMLFile
Mass spectrometry imaging ontologyfind_descendants_in find_term find_terms get_obo valid_terms
Mass spectrometry imaging experimental metadataclass:ImzMeta ImzMeta ImzMeta-class [[<-,ImzMeta-method
Parse an Analyze 7.5 FileAnalyze75 Analyze75-class class:Analyze75 parseAnalyze
Parse an imzML Fileclass:ImzML ImzML ImzML-class parseImzML
Write an Analyze 7.5 FilewriteAnalyze writeAnalyze,array-method writeAnalyze,matter_arr-method writeAnalyze,sparse_arr-method
Write an imzML FilewriteImzML writeImzML,ImzMeta-method writeImzML,ImzML-method