NEWS

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CardinalIO 1.3.6 (2024-10-24)

BUG FIXES

• Fix writing scientific notation to imzML output (note: only affected parsing, not precision)

CardinalIO 1.3.5 (2024-10-16)

NEW FEATURES

• Support for parallel writing with BiocParallel
• Added 'BPPARAM' argument to 'writeAnalyze()'
• Added 'BPPARAM' argument to 'writeImzML()'

SIGNIFICANT USER-VISIBLE CHANGES

• Return 'outdata' attribute on 'writeAnalyze()' results with output 'matter' object
• Return 'outdata' attribute on 'writeImzML()' results with output 'matter' object

CardinalIO 1.3.4

SIGNIFICANT USER-VISIBLE CHANGES

• Parse imzML "binary data compression type" tags
• Compressed ibd data arrays are now attached as raw byte arrays (_without_ decompression)

CardinalIO 1.3.3

SIGNIFICANT USER-VISIBLE CHANGES

• Changed default 'mz.type' from "float32" to "float64"

CardinalIO 1.3.2

SIGNIFICANT USER-VISIBLE CHANGES

• Renaming imzML files when 'asis=TRUE' now signals a warning

CardinalIO 1.3.1

BUG FIXES

• Update broken unit test to reflect recent changes in 'matter'

CardinalIO 1.2.1

SIGNIFICANT USER-VISIBLE CHANGES

• Allow multiple options to 'check' in 'parseImzML'

BUG FIXES

• Check ibd file size against imzML binary data array offsets

CardinalIO 1.1.6

BUG FIXES

• Non-existent 'extraArrays' produce NULL instead of error

CardinalIO 1.1.5

BUG FIXES

• Allow root tags in 'ImzMeta' (e.g., if a tag is unknown)

CardinalIO 1.1.4

SIGNIFICANT USER-VISIBLE CHANGES

• Updated README.md

CardinalIO 1.1.3

NEW FEATURES

• Made 'writeAnalyze()' an S4 generic
• Add optional 'positions' parameter to 'writeAnalyze()'

SIGNIFICANT USER-VISIBLE CHANGES

• Change 'writeAnalyze()' parameter 'mz' to 'domain'

CardinalIO 1.1.2

BUG FIXES

• Remove case sensitivity when checking file extensions

CardinalIO 1.1.1

BUG FIXES

• Fix error when setting 'ImzMeta' elements to NULL

CardinalIO 0.99.2

NEW FEATURES

• Added support for additional binary data arrays

SIGNIFICANT USER-VISIBLE CHANGES

• Casefold checksums and UUIDs before comparison

CardinalIO 0.99.1

SIGNIFICANT USER-VISIBLE CHANGES

• Added package-level 'CardinalIO' help page

CardinalIO 0.99.0

SIGNIFICANT USER-VISIBLE CHANGES

• Update 'Analyze75' and 'ImzML' classes for Bioconductor
• Prepare for Bioconductor submission

CardinalIO 0.7.0

NEW FEATURES

• Added 'parseAnalyze()' and 'writeAnalyze()'
• Support for Analyze 7.5 files

CardinalIO 0.6.0

SIGNIFICANT USER-VISIBLE CHANGES

• Update vignette to include writing imzML files

CardinalIO 0.5.0

NEW FEATURES

• New 'writeImzML()' method for 'ImzMeta'
• Support for writing the ".ibd" file

CardinalIO 0.4.0

NEW FEATURES

• New 'ImzMeta' class

CardinalIO 0.3.0

NEW FEATURES

• Added 'extra' argument to parseImzML()
• Added 'ibd' argument to parseImzmL()
• Added checking of UUIDs and checksums

CardinalIO 0.2.0

NEW FEATURES

• Added 'writeImzML()' method

CardinalIO 0.1.0

NEW FEATURES

• Get parseImzML() working
• New 'ImzML' class