Package: CONSTANd 1.13.0

Dirk Valkenborg

CONSTANd: Data normalization by matrix raking

Normalizes a data matrix `data` by raking (using the RAS method by Bacharach, see references) the Nrows by Ncols matrix such that the row means and column means equal 1. The result is a normalized data matrix `K=RAS`, a product of row mulipliers `R` and column multipliers `S` with the original matrix `A`. Missing information needs to be presented as `NA` values and not as zero values, because CONSTANd is able to ignore missing values when calculating the mean. Using CONSTANd normalization allows for the direct comparison of values between samples within the same and even across different CONSTANd-normalized data matrices.

Authors:Joris Van Houtven [aut, trl], Geert Jan Bex [trl], Dirk Valkenborg [aut, cre]

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CONSTANd.pdf |CONSTANd.html✨
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NEWS

# Install 'CONSTANd' in R:
install.packages('CONSTANd', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/pdiracdelta/constand/issues

On BioConductor:CONSTANd-1.13.0(bioc 3.20)CONSTANd-1.12.0(bioc 3.19)

bioconductor-package

1 exports 0.49 score 0 dependencies 3 mentions

Last updated 2 months agofrom:3906c1715c

Exports:CONSTANd

Dependencies:

CONSTANd

Joris Van Houtven, Geert Jan Bex, Dirk Valkenborg

Rendered fromCONSTANd.Rmdusingknitr::rmarkdownon Jun 20 2024.

Last update: 2021-02-22
Started: 2020-10-19